Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre2g04457 ATGGATGGCTTAATTTTTGCCGGTGGCATTGCTTACTTTGGCGCTGTTGCTCTTTACTTTTCTGCCGCAAACAATGACAGGGAGGCCACGATTCTTAAATCCGTTGCCCGGGTCAACCAGCTGAAGGATCTATCACAACTGTTGGATGCAGAAAGATTACCCTTGCTTGTTACAATTTCTGGCCAAGTTGCTTCTGAAAACCCAATTAAGTGCGAGATTACTGGATTAAAAGGTGTAATAGTTGAAGAAAGAGTAGAGCAATTTTATCTTAAAAAAGAAGAGAAATGCAAGTGTGCTATTAAGCAAAATAAGAAATGCAAGTGTGCTATTAAGCCACAAAAGACATGCAATGATGCTGATTTCTGGACACTACATTCTGAGCCCCCTGATTCCTGGACACAACATTCTAAGTTTATATCACGCAATGCTAAAGAGGTCCCATGGTATCTGGATGATGGGACTGATCGTGTGCATGTGGCTGGAGCTCGTGGTGCCACTGCTTTTGTATATCCTGTTGCAAGATCAAAATTTGATGCGTCAGGTCAGACACTTGTATGTGACACAATGGATAGTCGCCGAGATAAAAAGATCCTTGGATTGAAGAGGATTGAATGGGTACTTCCAGTTGGATTTGTTTTGACTGTTGTTGGTGAGGCCTCTAAAGATGATGACGGGTCCGTTCGAATTCAGCGACCTCGCGAAGGGCCATTTTATGTGTCTTACAAAACAATTGATGAACTCATTGCAAATTTCGAGAATTTTGCGAGGTGGTGTATATATATTTCTGTGGGCCTAACAGTGATTGGTACTAGTCTAATAGCCGCATGTGTTATCGAAAGTCAGGGTTGA 849 0.4217 MDGLIFAGGIAYFGAVALYFSAANNDREATILKSVARVNQLKDLSQLLDAERLPLLVTISGQVASENPIKCEITGLKGVIVEERVEQFYLKKEEKCKCAIKQNKKCKCAIKPQKTCNDADFWTLHSEPPDSWTQHSKFISRNAKEVPWYLDDGTDRVHVAGARGATAFVYPVARSKFDASGQTLVCDTMDSRRDKKILGLKRIEWVLPVGFVLTVVGEASKDDDGSVRIQRPREGPFYVSYKTIDELIANFENFARWCIYISVGLTVIGTSLIAACVIESQG 282
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre2g04457 282 PANTHER - 5 279 IPR044231 GO:0004842|GO:0016567
Trre2g04457 282 Pfam E3 Ubiquitin ligase 131 271 IPR022170 GO:0004842|GO:0006996|GO:0016567
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre2g04457 Trre-Chr2 52195660 52198158 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre2g04457 13 280 C3H Transcription Factor Family AT1G63900 46.296 3.15e-76 232
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre2g04457 K15688 - tpra:123914603 313.153