Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre2g04455 ATGGTTCCTTGGAATGGTATCAGCTGCTGTTTGAGTGCTGCTGCTCTTTATATTCTCGGTAGAGACAGTGGAAGGAATGTTGATTTTCTTAAATCCATTAACCGGGTCAATCAACTGAAGGAGCTAGCACAATTGTTGGATGAGGAAATAATTCCCTTGGTTGTTGCAATTTCTGGAAGAGTTGGTTCTGAAACCCCAATTAGCTGCGAGTTCAGTGGTTTGAGAGGTGTAATAGTTGAAGAAAGAGCAGAACAACATTTTCTTAAACACAATGATGCTGGTTCCTGGATTCAAGATTCTGCGTCAATGTTATCCATGAGTAAAGAAGTTCCTTGGTATCTGGAAGACGGGACTGATCGTGTGCGTGTATTTGGAGCTCGGGGTGCTAGTGGTTTTGCATTACCTGTTGGAAGTGAGGCATTTGAACAGTCGAGTCCGGATCTTGAGCGTGGAACATTGGATTATCTCCAAGGTCTAAAGATGCTGGGAGTGAAGAGAATTGAACGGGTACTTCCAGTTGGAACTTCCTTGACCGCTGTTGGTGAGGTCGTTAGAGACGATGTTGGAACCATTCGAATTCAGCGACCCCTCAAAGGGCCATTTTTAGTCTCTCCCAAAACGATTGATGAACTCATTGCAAATATTGGGAAATGGGCAAGCTGGTATAAGTGGGCTTCTGTGGGCTTGACAGCGTTGGGTGTTTATATGATAGCCAATCATACTATTCGATACATCTTGGAAAGACGGCATCGCAGAGAATTCCAGAAAAGGTTACTCGCTGCAGCTGCTGCCATGAGATCTGGACAAGATAATGGAGGTGAAAGGGCTGACATTTTATCAGATAGTGCTAAAAGGGAAAGCGCAATGCTAAATTTATGTGTAATATGCCTCGAGCAGGAATATAACTCTGTTTTTGTTCCGTGTGGACATATGTGCTGCTGTACAGCTTGCTCTTCGCACTTGACCAGCTGTCCTCTTTGCCGGAGACAGATAGAGAAGGCAGTAAAAACTTTTCGTCATTGA 1023 0.4409 MVPWNGISCCLSAAALYILGRDSGRNVDFLKSINRVNQLKELAQLLDEEIIPLVVAISGRVGSETPISCEFSGLRGVIVEERAEQHFLKHNDAGSWIQDSASMLSMSKEVPWYLEDGTDRVRVFGARGASGFALPVGSEAFEQSSPDLERGTLDYLQGLKMLGVKRIERVLPVGTSLTAVGEVVRDDVGTIRIQRPLKGPFLVSPKTIDELIANIGKWASWYKWASVGLTALGVYMIANHTIRYILERRHRREFQKRLLAAAAAMRSGQDNGGERADILSDSAKRESAMLNLCVICLEQEYNSVFVPCGHMCCCTACSSHLTSCPLCRRQIEKAVKTFRH 340
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre2g04455 340 ProSiteProfiles Zinc finger RING-type profile. 293 328 IPR001841 -
Trre2g04455 340 FunFam E3 ubiquitin-protein ligase SP1 281 339 - -
Trre2g04455 340 Pfam E3 Ubiquitin ligase 85 233 IPR022170 GO:0004842|GO:0006996|GO:0016567
Trre2g04455 340 Pfam Zinc finger, C3HC4 type (RING finger) 291 333 - -
Trre2g04455 340 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 276 339 IPR013083 -
Trre2g04455 340 PANTHER - 1 307 IPR044231 GO:0004842|GO:0016567
Trre2g04455 340 SUPERFAMILY RING/U-box 292 334 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre2g04455 Trre-Chr2 52183051 52186135 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre2g04455 1 263 C3H Transcription Factor Family AT1G63900 69.057 5.71e-134 380
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre2g04455 K15688 - gmx:100803252 558.91