Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre2g04454 ATGGCAATGGTTCCTTGGAATGGTATCAGCTGCTGTTTGAGTGCTGCTGCTCTTTATATTCTCGGTAGAGACAGTGGAAGGAATGTTGATTTTCTTAAATCCATTAACCGGGTCAATCAACTGAAGGAGCTAGCACAATTGTTGGATGAGGAAATAATTCCCTTGGTTGTTGCAATTTCTGGAAGAGTTGGTTCTGAAACCCCAATTAGCTGCGAGTTCAGTGGTTTGAGAGGTGTAATAGTTGAAGAAAGAGCAGAACAACATTTTCTTAAACACAATGATGCTGGTTCCTGGATTCAAGATTCTGCGTCAATGTTATCCATGAGTAAAGAAGTTCCTTGGTATCTGGAAGACGGGACTGATCGTGTGCGTGTATTTGGAGCTCGGGGTGCTAGTGGTTTTGCATTACCTGTTGGAAGTGAGGCATTTGAACAGTCGAGTCCGGATCTTGAGCGTGGAACATTGGATTATCTCCAAGGTCTAAAGATGCTGGGAGTGAAGAGAATTGAACGGGTACTTCCAGTTGGAACTTCCTTGACCGCTGTTGGTGAGGTCGTTAGAGACGATGTTGGAACCATTCGAATTCAGCGACCCCTCAAAGGGCCATTTTTAGTCTCTCCCAAAACGATTGATGAACTCATTGCAAATATTGGGAAATGGGCAAGCTGGTATAAGTGGGCTTCTGTGGGCTTGACAGCGTTGGGTGTTTATATGATAGCCAATCATACTATTCGATACATCTTGGAAAGACGGCATCGCAGAGAATTCCAGAAAAGGTTACTCGCTGCAGCTGCTGCCATGAGATCTGGACAAGATAATGGAGGTGAAAGGGCTGACATTTTATCAGATAGTGCTAAAAGGGAAAGCGCAATGCTAAATTTATGTGTAATATGCCTCGAGCAGGAATATAACTCTGTTTTTGTTCCGTGTGGACATATGTGCTGCTGTACAGCTTGCTCTTCGCACTTGACCAGCTGTCCTCTTTGCCGGAGACAGATAGAGAAGGCAGTAAAAACTTTTCGTCATTGA 1029 0.4412 MAMVPWNGISCCLSAAALYILGRDSGRNVDFLKSINRVNQLKELAQLLDEEIIPLVVAISGRVGSETPISCEFSGLRGVIVEERAEQHFLKHNDAGSWIQDSASMLSMSKEVPWYLEDGTDRVRVFGARGASGFALPVGSEAFEQSSPDLERGTLDYLQGLKMLGVKRIERVLPVGTSLTAVGEVVRDDVGTIRIQRPLKGPFLVSPKTIDELIANIGKWASWYKWASVGLTALGVYMIANHTIRYILERRHRREFQKRLLAAAAAMRSGQDNGGERADILSDSAKRESAMLNLCVICLEQEYNSVFVPCGHMCCCTACSSHLTSCPLCRRQIEKAVKTFRH 342
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre2g04454 342 Pfam Zinc finger, C3HC4 type (RING finger) 293 335 - -
Trre2g04454 342 ProSiteProfiles Zinc finger RING-type profile. 295 330 IPR001841 -
Trre2g04454 342 Pfam E3 Ubiquitin ligase 87 235 IPR022170 GO:0004842|GO:0006996|GO:0016567
Trre2g04454 342 FunFam E3 ubiquitin-protein ligase SP1 283 341 - -
Trre2g04454 342 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 278 341 IPR013083 -
Trre2g04454 342 SUPERFAMILY RING/U-box 294 336 - -
Trre2g04454 342 PANTHER - 3 309 IPR044231 GO:0004842|GO:0016567
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre2g04454 Trre-Chr2 52183051 52186141 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre2g04454 3 265 C3H Transcription Factor Family AT1G63900 69.057 3.97e-134 381
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre2g04454 K15688 - gmx:100803252 558.91