Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre2g04437 ATGATTATCAACAACATCTTCATCATCTTCTTCATCCTCTTAACAACTTTCCCTCTCTTTTCTCTCTCCGCCACATGTCCTCTCAACTTCACCATCCTAACCACCCTCAACACCGACGCCGCCACAACACCACCCTCTTCCTTCACTTCAACACCATGCCAATTCGTTCACCAAGCTCTCCGCTTAGTTCAATCCGACTATCTCCACCGCACCGACTCTTTCCTCCCTCCTTTAAACTCCTCCGTTCCATGTTGGGACTCTTTCCAATCTTACATCAACAAATTCGAACCAAATTTCAACATTCGTACCTCTTGTGGTTTTCAAACAAGTTGGATCTCACAAGGTTGTGTCAACGTTACAACAAGACAACAATTTGAATCAATAGTTCCAAAATCAACTATTCAAATTATGCAATCAAATTGTAATCAATCACTTCAAGATAATTCTCCTTGTGCTCTTTGTACGACTAGTTTATCTGGTTTACCTAATCTTGGTCAATCCATTGGTAATCTTTCTGATTGTACTGGTTATCCTTCAATCTATGCTGCTGCTTTTTCTAATCAATTTGGACCCTCTGATCCTGGTACTGCTAAGTGTTTATTTGCACTTGATTTCACTTCTGGTGGTGGTTCTGGTAGTAAGAAAAAAGTTATTATTATTGTTGTTGTTTGTGTTGTTTCTGTTTTGATTTTGTTGTTGATAGTTATTGGTTTTTGGGTTTATTGGAAATTTAATGATAAGTCAATTGGGGATGATGGTAAGGATTATGGTGCTAATATCGGTGAGGCGGGTTCGGTTTCTGGGTTGGATTTGGACCAAAGTACTACTTTGATTAGGTTTACTATCGATGATATTAAGAAGGCGACGAGGAATTTTCATAGAGATAATATAATTGGGAAAGGTGGTTATGGGAATGTGTATAAAGGGTTGTTGAATGATGGAAGTGAAGTTGCTTTTAAGAGGTTTAAGAATTGTTCTGCTGCTGGTGATTCTAGTTTTACTCATGAGGTTCAAGTTATTGCTAGTATTAGGCATGTCAATCTTGTTGCTTTGAGAGGCTATTGTAGTGCGACGACACGTTTAGAGGGTTATCAGAGGATTATTGTTTGTGATTTGATGAAAAATGGGAGTCTTCATGATCATTTGTTTGGTTCTGGAGGGGTGAAACTTAGTTGGCCGGCTCGTCAGAAGATTGCTCTTGGAACTGCTAGGGGATTGGCTTATTTGCATTATGGAGCTCAACCTGCTATTATTCATAGGGATATTAAAGCAAATAATATACTTTTGGATGATAAGTTTGAAGCTAAGGTTGCTGATTTTGGACTTGCGAAGTTTAATCCGGAGGGAATGACTCATATGAGTACAAGGGTAGCTGGAACTATGGGGTATGTTGCTCCTGAGTATGCTTTGTATGGACAATTGACAGAAAGGAGTGATGTGTTTAGTTTTGGTGTTGTGCTTCTTGAGCTATTGAGTGGAAGAAAAGCTCTTGAAACGAACGATGATGGACAACCTTCTGCTTTGACTGATTGGGCTTGGTCATTGGTTAGAATGGGAAATGCGTTGGATGTTATTGAAGATGGAATGCCGGAACAAGGTTCAAATCAAGTTCTTGAGAAGTATGTGTTGATTGCTGTGCTTTGTTCTCATCCACAGTTATATGCTAGGCCAACAATGGATCAAGTTGTTAAAATGATGGAGACCGAGGATGAAGTGGTGCCCACGATACCCGGACGGCCGATTCCTCTTGTCGCTGGGAGGCTTGATATTGAGAGATCTGCTAGCAGTTTTGGCGGCTCCGGTCAGCTCTCTAGTCCAACAGAATCTTTTAATGCAACAAGTCATGTATTCACTTCAAGCAATTGTGTATATGATTTTAGCCAAGTTCTGTTGGCGCTCATACTTATTCTAGTGTTTGGTATTGTTTTGAGTTAG 1935 0.4 MIINNIFIIFFILLTTFPLFSLSATCPLNFTILTTLNTDAATTPPSSFTSTPCQFVHQALRLVQSDYLHRTDSFLPPLNSSVPCWDSFQSYINKFEPNFNIRTSCGFQTSWISQGCVNVTTRQQFESIVPKSTIQIMQSNCNQSLQDNSPCALCTTSLSGLPNLGQSIGNLSDCTGYPSIYAAAFSNQFGPSDPGTAKCLFALDFTSGGGSGSKKKVIIIVVVCVVSVLILLLIVIGFWVYWKFNDKSIGDDGKDYGANIGEAGSVSGLDLDQSTTLIRFTIDDIKKATRNFHRDNIIGKGGYGNVYKGLLNDGSEVAFKRFKNCSAAGDSSFTHEVQVIASIRHVNLVALRGYCSATTRLEGYQRIIVCDLMKNGSLHDHLFGSGGVKLSWPARQKIALGTARGLAYLHYGAQPAIIHRDIKANNILLDDKFEAKVADFGLAKFNPEGMTHMSTRVAGTMGYVAPEYALYGQLTERSDVFSFGVVLLELLSGRKALETNDDGQPSALTDWAWSLVRMGNALDVIEDGMPEQGSNQVLEKYVLIAVLCSHPQLYARPTMDQVVKMMETEDEVVPTIPGRPIPLVAGRLDIERSASSFGGSGQLSSPTESFNATSHVFTSSNCVYDFSQVLLALILILVFGIVLS 644
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre2g04437 644 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 65 591 - -
Trre2g04437 644 SMART serkin_6 292 566 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre2g04437 644 Pfam Protein kinase domain 292 564 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre2g04437 644 ProSitePatterns Protein kinases ATP-binding region signature. 298 320 IPR017441 GO:0005524
Trre2g04437 644 CDD STKc_IRAK 298 567 - -
Trre2g04437 644 ProSitePatterns Serine/Threonine protein kinases active-site signature. 417 429 IPR008271 GO:0004672|GO:0006468
Trre2g04437 644 FunFam probable LRR receptor-like serine/threonine-protein kinase RKF3 373 574 - -
Trre2g04437 644 ProSiteProfiles Protein kinase domain profile. 292 573 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre2g04437 644 SUPERFAMILY Protein kinase-like (PK-like) 275 576 IPR011009 -
Trre2g04437 644 Gene3D Phosphorylase Kinase; domain 1 265 371 - -
Trre2g04437 644 FunFam probable LRR receptor-like serine/threonine-protein kinase RKF3 259 371 - -
Trre2g04437 644 Gene3D Transferase(Phosphotransferase) domain 1 373 574 - -
Trre2g04437 644 Pfam SPARK 23 161 IPR043891 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre2g04437 Trre-Chr2 51997424 51999743 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre2g04437 1 607 Receptor kinase-like Gene Family AT2G48010 60.984 0.0 751
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RKF3 Trre2g04437 Pkinase 4.5e-42 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre2g04437 - - gmx:100800760 878.241