Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre2g04417 ATGTCTTTTAGGAGTATGATTATGGATAGGAAGGGATTTGAGGTTAAATTTGGGTATGGTTTGAGATCAAGGTCACAGTCACACTGTGATGTTGGTGTTACCGATGGTTGTTTGGTGGTTGATGGCATGAAGCAGAGTTGTTGGGCTAACATGCCCCCTGAGCTTTTGAGGGATGTGCTTATGAGAATTGAAGTCTCAGATAATACTTGGCCTGCCCGGAAAAATGTTGTTGCTTGCGCCGGTGTTTGCAGGAGTTGGAGAGAAATTGTGAAGGAAATTGTCAAACCTCCTCAACAATCCAGCAAGTTGACATTCCCTATTTCCTTGAAGCAGCCTGGTCCAAGGGATTCTCTCATTCAGTGCTATATTAAACGAAATCGCAGTAACCAAACATATTATCTTTTTCTCAGTTTGAACCAAGCCTCAACTGATGACGGCAAGTTCCTTCTTGCTGCACGCAAGTGCCGGCGTGCAACCCACACTGACTATATCATTTCTCTAAACTGCGATGATGTATCAAGAGGGAGTAGCACCTATATTGGGAAGTTGAGATCAAACTTTTTGGGCACTAAATTTACCGTTTATGATGCACACCCTCCAATCTATGGAGCCAACGTTGTAAAATCTCGTTCCACCAGGCTGGTTAGTCTCAAACAAGTGTCTCCAAGAGTTCCTGCAGGCAACTATCCCATTGTGCATGTCTCATATGATCTGAATGTTTTGGGCTCTAGGGGCCCAAGGATAATGCAATGTGTTATGGATGCCATCCCTGCCTCATCTGTTGAACCTGGAGGTGTGGCCCCAACACAGACTCGATTTCTTCATAGCAGAATTGATACTTCTCCATCTATCCCATTCTTCAGATCAAAATCGACCCGCTCAGAGAATATCCAATCAGTAGTACCTTTGACTGGGCAAAACGACGGAATGCTGGTGTTGAAAAACAAGGCTCCTAGGTGGCATGAACAACTCCAATGCTGGTGTTTGAACTTCAACGGACGTGTGACAGTTGCTTCAGTTAAGAATTTCCAGCTGGTTGCATCTCCCAAAAATGGCGTTTCTGAACAGGCTCAGGAAAATGTTATTCTACAGTTTGGAAAAGTTGGAAAGGATGTATTCACTATGGATTACCAGTATCCAATCTCCGCCTTTGAAGCATTTGCAATATGCCTTAGCAGCTTTGACACCAAGATTGCTTGTGAATGA 1206 0.4395 MSFRSMIMDRKGFEVKFGYGLRSRSQSHCDVGVTDGCLVVDGMKQSCWANMPPELLRDVLMRIEVSDNTWPARKNVVACAGVCRSWREIVKEIVKPPQQSSKLTFPISLKQPGPRDSLIQCYIKRNRSNQTYYLFLSLNQASTDDGKFLLAARKCRRATHTDYIISLNCDDVSRGSSTYIGKLRSNFLGTKFTVYDAHPPIYGANVVKSRSTRLVSLKQVSPRVPAGNYPIVHVSYDLNVLGSRGPRIMQCVMDAIPASSVEPGGVAPTQTRFLHSRIDTSPSIPFFRSKSTRSENIQSVVPLTGQNDGMLVLKNKAPRWHEQLQCWCLNFNGRVTVASVKNFQLVASPKNGVSEQAQENVILQFGKVGKDVFTMDYQYPISAFEAFAICLSSFDTKIACE 401
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre2g04417 401 CDD F-box_AtTLP-like 48 92 - -
Trre2g04417 401 Gene3D Tubby Protein; Chain A 105 401 IPR025659 -
Trre2g04417 401 PANTHER TUBBY-RELATED 43 399 - -
Trre2g04417 401 SUPERFAMILY F-box domain 43 92 IPR036047 GO:0005515
Trre2g04417 401 FunFam Tubby-like F-box protein 105 401 - -
Trre2g04417 401 Pfam F-box domain 48 94 IPR001810 GO:0005515
Trre2g04417 401 PRINTS Tubby superfamily signature 358 377 IPR000007 -
Trre2g04417 401 PRINTS Tubby superfamily signature 179 203 IPR000007 -
Trre2g04417 401 PRINTS Tubby superfamily signature 379 401 IPR000007 -
Trre2g04417 401 PRINTS Tubby superfamily signature 313 330 IPR000007 -
Trre2g04417 401 PRINTS Tubby superfamily signature 228 255 IPR000007 -
Trre2g04417 401 PRINTS Tubby superfamily signature 331 347 IPR000007 -
Trre2g04417 401 PRINTS Tubby superfamily signature 163 179 IPR000007 -
Trre2g04417 401 Pfam Tub family 109 396 IPR000007 -
Trre2g04417 401 ProSitePatterns Tub family signature 2. 386 401 IPR018066 -
Trre2g04417 401 SUPERFAMILY Tubby C-terminal domain-like 97 401 IPR025659 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre2g04417 Trre-Chr2 51759653 51762147 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre2g04417 1 401 TUB Transcription Factor Family AT2G47900 74.272 0.0 607
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TUB Trre2g04417 Tub 7.6e-109 CL0395
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre2g04417 K19600 - gmx:100809257 728.398