Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre2g04413 ATGTTGCTTCTCTTTTGGTCTATATGCTGCCTTGTATTGTTTCTTCTCTTTACTTCAAATTTCCTAAACAAATCGGCCTCTGCCTTAGGAAACGAGACTGACCATTCTGCATTACTCATATTCAAAAAATCAATAACGAGTGACCCTTTTGGAGTATTAGATTCTTGGAATAGTTCTAATCACTTTTGTAAGTGGGATGGAGTAACTTGCGGTCGAAGACATCAAAGAGTCACAAAGATAGAGTTGGAAGGATACCAACTGCAAGGTTCTATATCACCTCACGTTGGTAATCTTTCCTTTCTGAGGATCCTCTACCTCGATAATAATCGCTTCTATGCCAATATCCCGCGAGAGTTAGGCCGTTTATTTCGACTGCAGGCCATCTCTTTGGCCAATAATACTTTAGGAGGTCAATTTCCAATCAGTCTGATAAATTGCTCTCAACTGAGGGAGATCGGATTAGACGGGAATCATTTTATTGGCCAAATACCAATGGATATTCACTCCCTTACGAAGCTTCATTTTTTCAGTGTTGCAAAAAACAATCTAACCGGTCAAATTCCACCTTCTATATGGAATCTTTCTTCCCTCACCGTTCTCTCTTTTGCTTATAACTACTTGGAGGGAAACATACCAGAAGAAATAGGCCTTTTAAAAAACTTGACAAAGATGTCAGTGTCACAAAACGGATTATCTGGTATACTTCCCTTATCACTTTACAATATGTCATCTCTCACTGACCTCTACACAGCAGGCAATCAATTCCATGGTTCTCTTCCAAACAACATGTTCACAACCCTCCCAAATCTTAGGAAATTTCTGTTTGGTGCGAATCAATACTCAGGTCCAATCCCAACATCCATCAGTAATGCATCTCACATGCAATTGTTTGACATTGGTCATAACAATTTTGTAGGACAAATTCCAAACCTTGGAAAGCTACAAAATCTTTCTATTTTGGCTGTAGGTGAAAATAATCTTGGCAGCAATTCATCATCCACCGGTAATGACTGGGATTTTATAAAGTCTTTGGTAAACTGTAGTTATCTTGATATAATATTTGTTGAGAGTAATAACTTTGGAGGTCCTTTGCCCAAAATTATTGGCAATTTGTCCACCCATCTCTCACAACTTGCTATGGCTAGCAATCTGATATCTGGAAAAATTCCAACAGAACTGGGAAATCTTGTAAACTTGATTTTCTTGTCCATAGAGGACAACCTCTTAATTGATGTTATTCCGGAGAGTTTTTCTAAGCTTCATAAAATGCAAGAATTGTTTTTAAAAATAAACAAACTGTCGGGTGAAATTCCGGCAACTATCTTAGGAAATCTTAGTCAATTATCTCTGTTGGATTTATCATACAATTTGTTGGTTGGAAAGATTCCTTCAACTATTGGAAGTTGCAAAGCGTTGCAAGGAGTAGACTTCTCAGTGAACAACCTTAGTGGAGCTATACCAACAGAACTTCTTGGCCTTTCCTCCTTATCAGTACTACTCAACCTATCACAAAACTCATTAAGTGGTAATTTACCTCCTGAGGTGGGTTTGCTTCAAAACATTGAGAGGCTTGATGTATCTGAAAATCATCTCTCTGGTGGCATTCCTACAAAAATTGGAGATTGCTCAAGCTTGGAGTACCTTTTCTTAGAGGGTAATTCTTTAGATGGAAACATACCATCTTCCTTATCTTCACTAAAAGGTCTTCTACAACTAGACCTGTCGCGGAACAACTTGTCTGGTTCAATTCCACAAGAATTACAAAATAATTCTGTGTTAGAATGGTTCAATGCTTCTTTTAACAAGTTGGAGGGTGAGGTGCCATTGCTTGGCATTTTCCAGAATGCTAGTAGAGTTTCATTGACTGGCAACGACGGGCTTTGTGGCGGAGTATCAAAACTGAATCTGCGACTTTGCCCGCCAAAAGATTTGAAAAAGAAAAAACACCATACCCACCGCAAGTTGATAATAATCATCTTCTCAATTGCATTTCTTCTTCTACTGTCATTTGTCCTTACTTTCTTCATCTATAAGATAATGAGGAAAAGGCAGAGAAAAGCATCCACTGATTCAACAATTGAGCAACTTCCAAAGGTATCATACCAAGAACTACACCATGCCACTGATGGGTTCTCGATTCAGAACTTGATAGGAACCGGAGGTGTAGGTTTTGTGTACAAAGGAAGACTTAATTCAGAAGAAAGAGTTGTTGCTATAAAAGTTCTAAACCTTCAGAAGAAAGGAGCTCATAAAAGTTTCATTGCCGAATGTAATGCTTTTAGAAATATCAGGCATAGAAATCTAGTCAAGATTATCACATGTTGCTCTAGTGTGGATCACAAAGGTAATGACTTTAAAGCAATAGTTTATGAGTACATGACAAATGGAAGCTTAGAGGAATGGTTGCATCAAAATGCAGAACAACAAAAAACACTAAAATTGGAAGAAAGATTAGAAATTGTTTTTGGAATTGCTTCTGCATTACACTATCTTCACTATGAATGTGAGAAGCCTATTGTTCATTGTGATTTAAAACCAAGCAATGTCCTTCTTGATGATGACATGGTCGCTCATGTGAGTGATTTTGGCTTAGCCAAACTTGTTTCAACAATTGATGGTAACTCCAACAACCAAACAAGCTCGATGGGGATAAAGGGGACTATAGGTTATACTCCTCCAGAGTATGGAATGGATTCTCAATTGTCAACAGAAGGCGACATGTACAGCTTCGGGATTCTTCTTTTGGAGATGTTAACTGGGAGAAGACCAACTGACGATATTTTTAAAGAAGGGCACAACCTCCATAACTATGTAAAAATTGCTTTTCCCAATAACATTTTGGAGATTGTTGATGCAACTCTCCTCTCGATGGAAAATGAAAATCTTGCAGTAACAACAACGGTTGCAAGTGATTTGCATCCTAATGTTGAGAGGTGCTTATCTTCTTTATTTAAGATTGGATTATCTTGTTCAGTGGAGTCTCCAAGAGAACGAGTCAATATCAAGGATGTCATCACAGAACTCAATATAATTTCAAAAACTTTGGCTGATCCAAGGGATTAA 3063 0.3787 MLLLFWSICCLVLFLLFTSNFLNKSASALGNETDHSALLIFKKSITSDPFGVLDSWNSSNHFCKWDGVTCGRRHQRVTKIELEGYQLQGSISPHVGNLSFLRILYLDNNRFYANIPRELGRLFRLQAISLANNTLGGQFPISLINCSQLREIGLDGNHFIGQIPMDIHSLTKLHFFSVAKNNLTGQIPPSIWNLSSLTVLSFAYNYLEGNIPEEIGLLKNLTKMSVSQNGLSGILPLSLYNMSSLTDLYTAGNQFHGSLPNNMFTTLPNLRKFLFGANQYSGPIPTSISNASHMQLFDIGHNNFVGQIPNLGKLQNLSILAVGENNLGSNSSSTGNDWDFIKSLVNCSYLDIIFVESNNFGGPLPKIIGNLSTHLSQLAMASNLISGKIPTELGNLVNLIFLSIEDNLLIDVIPESFSKLHKMQELFLKINKLSGEIPATILGNLSQLSLLDLSYNLLVGKIPSTIGSCKALQGVDFSVNNLSGAIPTELLGLSSLSVLLNLSQNSLSGNLPPEVGLLQNIERLDVSENHLSGGIPTKIGDCSSLEYLFLEGNSLDGNIPSSLSSLKGLLQLDLSRNNLSGSIPQELQNNSVLEWFNASFNKLEGEVPLLGIFQNASRVSLTGNDGLCGGVSKLNLRLCPPKDLKKKKHHTHRKLIIIIFSIAFLLLLSFVLTFFIYKIMRKRQRKASTDSTIEQLPKVSYQELHHATDGFSIQNLIGTGGVGFVYKGRLNSEERVVAIKVLNLQKKGAHKSFIAECNAFRNIRHRNLVKIITCCSSVDHKGNDFKAIVYEYMTNGSLEEWLHQNAEQQKTLKLEERLEIVFGIASALHYLHYECEKPIVHCDLKPSNVLLDDDMVAHVSDFGLAKLVSTIDGNSNNQTSSMGIKGTIGYTPPEYGMDSQLSTEGDMYSFGILLLEMLTGRRPTDDIFKEGHNLHNYVKIAFPNNILEIVDATLLSMENENLAVTTTVASDLHPNVERCLSSLFKIGLSCSVESPRERVNIKDVITELNIISKTLADPRD 1020
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre2g04413 1020 Gene3D Ribonuclease Inhibitor 337 637 IPR032675 -
Trre2g04413 1020 FunFam LRR receptor-like serine/threonine-protein kinase EFR 337 645 - -
Trre2g04413 1020 ProSitePatterns Serine/Threonine protein kinases active-site signature. 839 851 IPR008271 GO:0004672|GO:0006468
Trre2g04413 1020 FunFam Putative leucine-rich repeat receptor-like serine/threonine-protein kinase 793 1019 - -
Trre2g04413 1020 Gene3D Ribonuclease Inhibitor 190 336 IPR032675 -
Trre2g04413 1020 SMART LRR_typ_2 98 122 IPR003591 -
Trre2g04413 1020 SMART LRR_typ_2 170 194 IPR003591 -
Trre2g04413 1020 SMART LRR_typ_2 218 241 IPR003591 -
Trre2g04413 1020 SMART LRR_typ_2 445 469 IPR003591 -
Trre2g04413 1020 SMART LRR_typ_2 396 419 IPR003591 -
Trre2g04413 1020 SMART LRR_typ_2 420 444 IPR003591 -
Trre2g04413 1020 SMART LRR_typ_2 242 266 IPR003591 -
Trre2g04413 1020 SMART LRR_typ_2 518 542 IPR003591 -
Trre2g04413 1020 SMART LRR_typ_2 566 589 IPR003591 -
Trre2g04413 1020 CDD STKc_IRAK 717 1011 - -
Trre2g04413 1020 FunFam LRR receptor-like serine/threonine-protein kinase EFR 682 792 - -
Trre2g04413 1020 SMART serkin_6 711 1011 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre2g04413 1020 SUPERFAMILY Protein kinase-like (PK-like) 689 1008 IPR011009 -
Trre2g04413 1020 Pfam Protein kinase domain 713 951 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre2g04413 1020 SUPERFAMILY L domain-like 346 629 - -
Trre2g04413 1020 SUPERFAMILY L domain-like 32 327 - -
Trre2g04413 1020 FunFam LRR receptor-like serine/threonine-protein kinase GSO1 71 336 - -
Trre2g04413 1020 ProSiteProfiles Protein kinase domain profile. 711 976 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre2g04413 1020 Pfam Leucine rich repeat N-terminal domain 32 70 IPR013210 -
Trre2g04413 1020 PANTHER OS04G0122200 PROTEIN 229 1006 - -
Trre2g04413 1020 Gene3D Phosphorylase Kinase; domain 1 674 792 - -
Trre2g04413 1020 Gene3D Ribonuclease Inhibitor 31 189 IPR032675 -
Trre2g04413 1020 Gene3D Transferase(Phosphotransferase) domain 1 793 1018 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre2g04413 Trre-Chr2 51680039 51683193 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre2g04413 31 1008 Receptor kinase-like Gene Family AT3G47570 45.253 0.0 805
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XII-1 Trre2g04413 Pkinase 5.9e-43 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre2g04413 - - gmx:100792724 1110.9