Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre2g04412 ATGAGGGTGATCCTATTAAATAGGAATCGTTTTACTGGCCAAATACCAATGGAGATTCACTCCCTTGCCAAGCTTGATTATTTCAGTATTGCAAATAACAATCTAACCGGTCGAATTCCACCTTCTATATGGAATCTTTCTTCCCTCACTGTTCTCTCTTTGGCTTTTAACTACTTGGAGGGAAACATACCAGAAGAAATAGGCCGTTTGAAAAACTTGACAAAGATTTCAGTGGCACGGAACAAATTATCTGGTACGCTTCCCTCATCACTTTACAATTTGTCATCTCTTACTGACCTCTACACAGCAGTTAATCAATTCCACGGTTCTCTGCCAACCGACATGTTCACAACCCTCCCAAATCTTAGGCAATTTCTGTTTGCTTCGAATAGATACTCAGGTCCAATCCCAACATCCATCAGTAATGCATCTCAGATGCAATTGTTTGATATTGGTCGAAACAATTTTTCAGGACAAATTCCAAATCTTGGAAAGCTACAAAATCTTTCTATTTTGGCTGTAGGTAATAATAATCTTGGTAGCAATTCATCATCCACCGGTAATGATTGGGAGTTTATAGAGTCGTTGGTAAACTGCAGTAATATTGATGTAATATCTGTTGAGGTTAATAACTTAGGAGGTCCTTTGCCCAAAATTATTGGGAATTTGTCCACCCAAATCTCACAACTTGCTATGTCTGGCAATCTGATATCTGGAAAAATTCCAACAGAACTGGGAAGTCTTGTAAACTTGATTTTGTTGGCCATAGAGGGCACCCTCTTAACTGATGTTATTCCAGAGAGTTTTTCTAAACTTGTTTCAACAATTGATGGCAACTCCAATAACCAAGTCAGCTCAATGGGAATAAAGGGGACTATAGGTTATACTCCTCCAGAGTATGGAATGGATTCTCAATTGTCAACAGAAGGCGACATGTACAGCTTTGGTATTCTTCTTTTGGAGATGTTAACTGCGAGAAGACCAACCGATGAAATGTTTAAAGATGGGCACAACCTTCATAACTACGTAGAAATTTCATTTCCAAATAACATTTTGGAGGTTGTTGATACAACTCTCCTCTCAATGGAAGTAACAACAGAAGTTGCAAATGATTTGCATCCTAATGTTGAGAGGTGCTTATCTTCTTTATTTAAGATTGGATTATCTTGTTCAGTGGAGTCTCCAAGAGAACGAATCAATATCAAGGAAGTCATCACCGAACTCAATATAATTTCAAAAGCTTTGGCTGATCCAAGGGATTAA 1263 0.3816 MRVILLNRNRFTGQIPMEIHSLAKLDYFSIANNNLTGRIPPSIWNLSSLTVLSLAFNYLEGNIPEEIGRLKNLTKISVARNKLSGTLPSSLYNLSSLTDLYTAVNQFHGSLPTDMFTTLPNLRQFLFASNRYSGPIPTSISNASQMQLFDIGRNNFSGQIPNLGKLQNLSILAVGNNNLGSNSSSTGNDWEFIESLVNCSNIDVISVEVNNLGGPLPKIIGNLSTQISQLAMSGNLISGKIPTELGSLVNLILLAIEGTLLTDVIPESFSKLVSTIDGNSNNQVSSMGIKGTIGYTPPEYGMDSQLSTEGDMYSFGILLLEMLTARRPTDEMFKDGHNLHNYVEISFPNNILEVVDTTLLSMEVTTEVANDLHPNVERCLSSLFKIGLSCSVESPRERINIKEVITELNIISKALADPRD 420
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre2g04412 420 PANTHER RECEPTOR-LIKE PROTEIN 55 271 411 - -
Trre2g04412 420 Gene3D Transferase(Phosphotransferase) domain 1 272 417 - -
Trre2g04412 420 ProSiteProfiles Protein kinase domain profile. 1 410 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre2g04412 420 FunFam Predicted protein 14 113 - -
Trre2g04412 420 SUPERFAMILY Protein kinase-like (PK-like) 284 408 IPR011009 -
Trre2g04412 420 Gene3D Ribonuclease Inhibitor 1 185 IPR032675 -
Trre2g04412 420 Pfam Protein tyrosine and serine/threonine kinase 279 407 IPR001245 GO:0004672|GO:0006468
Trre2g04412 420 SUPERFAMILY RNI-like 3 274 - -
Trre2g04412 420 Gene3D Ribonuclease Inhibitor 186 271 IPR032675 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre2g04412 Trre-Chr2 51672916 51675608 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre2g04412 282 419 Receptor kinase-like Gene Family AT3G47090 39.130 6.15e-27 112
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XII-1 Trre2g04412 PK_Tyr_Ser-Thr 1.1e-06 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre2g04412 - - ahf:112742943 288.5