Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre2g04406 ATGAAGTTTCTTGTTGTTCTTGATGATGTTAGTGATCAAGAGCAACTAGAAATTTTAATTGAAACACTTGATTGGTTTGGAAGAGTTTGGGTGATTTTATTGATTGTCTTGCTTTGTTGTAGGGATGATTTTAGAAAAACATTGAAGGAAGTTAATTATGATTCGAAGGATGGTAAAAGGGTTAGTAAAGAGATTGGTGAGAAGTGGTGGTCCATGACTGATGCAGAGAAAAAGCCTTATTTGGATAGAGTTATTGAACTGAAGGCAGAATATGAGAAGGCTATGGAAATCTATAATGCTACTAAAAAGGAAGATCAACAAGAGGGGTTATGA 333 0.3453 MKFLVVLDDVSDQEQLEILIETLDWFGRVWVILLIVLLCCRDDFRKTLKEVNYDSKDGKRVSKEIGEKWWSMTDAEKKPYLDRVIELKAEYEKAMEIYNATKKEDQQEGL 110
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre2g04406 110 Pfam HMG (high mobility group) box 42 99 IPR009071 -
Trre2g04406 110 Gene3D High mobility group box domain 38 110 IPR036910 -
Trre2g04406 110 ProSiteProfiles HMG boxes A and B DNA-binding domains profile. 43 99 IPR009071 -
Trre2g04406 110 Coils Coil 84 108 - -
Trre2g04406 110 PANTHER HIGH MOBILITY GROUP B PROTEIN 4-RELATED 42 106 IPR031061 -
Trre2g04406 110 SUPERFAMILY HMG-box 45 106 IPR036910 -
Trre2g04406 110 SMART hmgende2 41 100 IPR009071 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre2g04406 Trre-Chr2 51534176 51534886 Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR HMG Trre2g04406 HMG_box 1.5e-09 CL0114
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre2g04406 K25507 - gmx:100810345 100.138