Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre2g04405 ATGAGTACCATCCTCGCCGGAGGCCACCATCTCATGCCTCGCCAGAACATTACGCCGTACCACACCAAATCACCACCGGAGCTCCAAAACAGTCAAATACTTCCAGATCCAAAACAAACCAGTGCACCAAGAACCGAATCAAACCTAACACACTGCCAGAGCGCCGAAAACCAAACCAAACTTCCAGATCCACCGCCGGCCAGAAAACGAAAAACAACTGAAAGAAGAGACACGGTTGGAACAACAGAAAGAACAGAACAGAAAACGAAAAACAACTGGGATGATTTTAGAAAAACATTGAAGGAAGTTAATTATGATTCGAAGGATGGTAAAAGGGTTAGTAAAGAGATTGGTGAGAAGTGGTGGTCCATGACTGATGCAGAGAAAAAGCCTTATTTGGATAGAGTTATTGAACTGAAGGCAGAATATGAGAAGGCTATGGAAATCTATAATGCTACTAAAAAGGAAGATCAACAAGAGGGGTTATGA 489 0.4294 MSTILAGGHHLMPRQNITPYHTKSPPELQNSQILPDPKQTSAPRTESNLTHCQSAENQTKLPDPPPARKRKTTERRDTVGTTERTEQKTKNNWDDFRKTLKEVNYDSKDGKRVSKEIGEKWWSMTDAEKKPYLDRVIELKAEYEKAMEIYNATKKEDQQEGL 162
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre2g04405 162 SUPERFAMILY HMG-box 90 156 IPR036910 -
Trre2g04405 162 PANTHER HIGH MOBILITY GROUP B PROTEIN 4-RELATED 94 158 IPR031061 -
Trre2g04405 162 MobiDBLite consensus disorder prediction 63 93 - -
Trre2g04405 162 Gene3D High mobility group box domain 89 162 IPR036910 -
Trre2g04405 162 Pfam HMG (high mobility group) box 95 151 IPR009071 -
Trre2g04405 162 ProSiteProfiles HMG boxes A and B DNA-binding domains profile. 86 151 IPR009071 -
Trre2g04405 162 MobiDBLite consensus disorder prediction 1 93 - -
Trre2g04405 162 MobiDBLite consensus disorder prediction 17 60 - -
Trre2g04405 162 Coils Coil 136 160 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre2g04405 Trre-Chr2 51534176 51540812 Dispersed/Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR HMG Trre2g04405 HMG_box 2.2e-08 CL0114
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre2g04405 K25507 - gmx:100810345 100.138