Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre2g04399 ATGGGTGATAATAACAACAACAAAGGCAAAGTCATCTCAAACATATATGAATCCTTTAAGTACAACAACAACAATTTCACATCTCATCAAGAAGATCATGAAGTAATCAAAGAGCAAGATCGTTTACTTCCAATAGCTAATGTTGGAAGAATCATGAAACAAATCTTGCCACCAAATGCAAAAATCTCCAAAGAAGCTAAAGAAACCATGCAAGAGTGTGTTTCTGAGTTTGTTAGCTTTGTAACTGGTGAAGCATCTGACAAGTGTCACAAGGAGAAGAGAAAGACAGTGAACGGTGATGATGTTTGTTGGGCTATGACTAACCTAGGGTTTGATGATTACTCTGAGCCACTCAAAAGGTATTTGTATAAGTATAGAGAATTAGATGTGGAAAGAGGAAACCAAAATAAGGGTAACAATATTAACAAGGGTTAA 435 0.3563 MGDNNNNKGKVISNIYESFKYNNNNFTSHQEDHEVIKEQDRLLPIANVGRIMKQILPPNAKISKEAKETMQECVSEFVSFVTGEASDKCHKEKRKTVNGDDVCWAMTNLGFDDYSEPLKRYLYKYRELDVERGNQNKGNNINKG 144
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre2g04399 144 Gene3D Histone, subunit A 29 144 IPR009072 GO:0046982
Trre2g04399 144 PRINTS CCAAT-binding transcription factor subunit A signature 70 88 - -
Trre2g04399 144 PRINTS CCAAT-binding transcription factor subunit A signature 108 126 - -
Trre2g04399 144 PRINTS CCAAT-binding transcription factor subunit A signature 89 107 - -
Trre2g04399 144 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED 10 132 IPR027113 GO:0001228|GO:0006355|GO:0016602
Trre2g04399 144 FunFam Nuclear transcription factor Y subunit B-3 31 144 - -
Trre2g04399 144 SUPERFAMILY Histone-fold 39 137 IPR009072 GO:0046982
Trre2g04399 144 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 42 106 IPR003958 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre2g04399 Trre-Chr2 51453499 51453933 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre2g04399 16 136 CCAAT-HAP3 Transcription Factor Family AT2G47810 63.448 4.53e-61 183
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YB Trre2g04399 CBFD_NFYB_HMF 3.4e-27 CL0012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre2g04399 K08065 - gmx:100817274 202.986