Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre2g04391 ATGGTAGAGGAAAATCATCCACAAGATGATATTCCTAATGAAGTCTATTCCTTTACCAAGATATTGACTTCAATGGAAGCAAGTACACGTGCTGCTGGACTTTATATTCCAAAGGAACATGCTGATAGATGCTTCCCCCCACTGGATATGACTATTCAACCAACAATGCAAGATCTTGCGGTGAAGGACTTGCATGGAATTGAGTGGAACTTTCGACATATTTACTATGGTAAGTTTAAGTTACTATTTTATTTCAAATATTTACCTTCTTTTGTTAACACAAGAAAACTTGTTCCCGGAGATTCATGCATTTTCGTCAGAGGAGAGAATGGTGAAATTGGTATTGGGATTCATCGAGCAATGAAACAACAAAGTGATATATGGAAAACATCGTCTCCACTTGGTTATATGTGTGCTGCTTCCCATGCTGTTTCTACAGGAACTATGTTCCTTGTCCAGTACTACCCTTGGATGACTCCATTTGAGTTTATGATCCCTATGAAAACTTTGTTGAGTCCATTGAAAGAGACTATTTCATTGGAAGGAGGGTACGCAAGTTGGCTGAAGTTGAAGGATCTGCAAGAAGGTAAATCAAACTCCTAA 603 0.3847 MVEENHPQDDIPNEVYSFTKILTSMEASTRAAGLYIPKEHADRCFPPLDMTIQPTMQDLAVKDLHGIEWNFRHIYYGKFKLLFYFKYLPSFVNTRKLVPGDSCIFVRGENGEIGIGIHRAMKQQSDIWKTSSPLGYMCAASHAVSTGTMFLVQYYPWMTPFEFMIPMKTLLSPLKETISLEGGYASWLKLKDLQEGKSNS 200
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre2g04391 200 CDD B3_DNA 17 119 IPR003340 GO:0003677
Trre2g04391 200 SMART B3_2 18 121 IPR003340 GO:0003677
Trre2g04391 200 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 13 170 IPR044835 GO:0003677|GO:0006355|GO:0009725
Trre2g04391 200 Pfam B3 DNA binding domain 18 119 IPR003340 GO:0003677
Trre2g04391 200 SUPERFAMILY DNA-binding pseudobarrel domain 12 127 IPR015300 -
Trre2g04391 200 Gene3D - 15 121 IPR015300 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre2g04391 Trre-Chr2 51418364 51420306 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre2g04391 14 180 B3 DNA Binding Superfamily AT5G62000 43.023 1.66e-43 152
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Trre2g04391 B3 4.1e-10 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre2g04391 - - tpra:123888364 270.011