Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre2g04386 ATGGTTGAAACCCGTCGCGGTTCTTCTTCTTCTTCTTCTAAACGCCCTCTTTCTTCTCCTTCTCCTTCCAACACCAAACGATCCAAGGTTTCTGAAGATGCTTCATCTACCACCTTACCTTCTGTTCCGGTTAAAGAATCTGAGACAAGAAACGAATCTGGTGAACCTATCATACAACAACAACAACAACAACCCTCTGATCTACCTGAAACGGCGTCGTTGAACGTTGTTGATGGTGATAAAGATAAGGCTCCATCTGTGCCAATTCAAGCTGAACCTTTGGTGTCTTCTCACTGTCCAGGTGAAACTGCTGAGAAATCAAAGGTGGCGGTTGCGCCGGTTGTTTCTTCTCGGAAAAAACGGACGGCTGCTAAACCAATTCCTAAGGTTCCTTGGGGGAAGCTTATATCTCAATGTTCTCAGAATCCTCACCTGTCCATTAGTGATCCAATCTTCACTGTTGGTCAAGGTCGTCAGAGTAATTTGGTGCTTAAAGATCCAACCGTTGGTAATGTTTTGTGCAAGTTGAGCCACATAGAGCAGCAACATGGAGGTTCATCAGTTGCCCTGCTGGAAATCACAGGGGGTAAAGGTGTTGTTCAAGTCAATGGGAAGACTTACCGAAGGAATGCCCGACTGATTTTAAATGGAGGCGATGAGGTGATCTTTGGCATTTCAGGAAAACATGCTTATATCTTTCAGCAGCTCAAAAATAACAATGTTTCTAGTGCTGGTATACCTCCTTCTGTGAGTATTTTAGAAGCCCAGAGTGCTGCAATGAATGGGATGCAAGTTGAAGCTAGATCTGGAGACCCGTCGGCTGTTGCAGGAGCATCAATATTGGCCTCTCTATCTAATATTCACAAAGATTTATCTCTTGTTTCCCCTCCAGCTAAAGCATGCAAGAAACAGAGTGCTGATAATTCATCACCACCTTCTGACCATGGGGATAATGGTCCGGACAGTGAAATGAAAGATACCACAAGTAATGATGAATCGGCTGGATTTTTTCCTTCTGGTAAAGATGTTCCTGCATCCTCTACCACTGGTAATGAAAATCCTAGCCTTGACACCATGGATGTGCATGCCAATGTGGGCTCAGATGTTGGGAAGGTGACTGCTGCTAATTATGAATTGAGGCCGTTACTGTGCATGCTTACTGGCTCAGGAACGGAATTTGATTTAAGTGGCAGCATTCACAAGATTTTAGAAGATCGAAAGGAACTTAAAGATGCTGATACACCTACAATATTGGCATCCACTAGGCGACAAGCATTTAGAGACAGCCTAGAACAGAGAATCCTCGATGCTGAGAATATTGATGTCTCTTTTGAAACTTTCCCATATTATCTAAGCAATACAACAAAGAATGTGTTGATTGCTTCTACATATATTCATTTGAAGTGCAATGGCTTTGGAAAATACGCTTCAGATCTCCCGTCGGTGTGCCCACGGATATTATTATCTGGTCCTTCAGGTTCGGAAATATACCAGGAGACTTTGTCCAAGGCACTTGCAAAGCATTTTGGTGCTAGGCTACTGATTGTGGATTCACTTTCGCTACCCGGTGGAACACCATCAAAGGAAGTTGATTCTGCCAAAGAAAGTTCAAAGCCCGAAAGGCCATCTGTTTTGTCTAAGAGAAGTAGCCAGACTTCTATATTACATCATAAGAAACCCACTTCTAGTGTTGATGCTGAAATTGTTGGTGGTTCTACATTAAGTTCGCAGGCTATGCTGAAGCAAGAGGTTTCTACTGCATCATCAAAAGCCACTGCTCTTAAAAAAGGTGATCGAGTAAAATTTGTCGGTAACTTTCCACCTGCTGTGTCGTCACTACAAAATTATTCTTTAAGTTACTCATCCATATCTGGCAGGGGACCAAGCTATGGCTTCCGGGGCAAAGTTGTACTTGCTTTTGAAGACAACGATTCTTCAAAAATTGGGGTCAGATTTGATAAATCAATTCCAGATGGCAATGATCTTGGAGGCCATATCGAAGATGATCATGGGTTCTTTTGTTCTGCAAACCATTTACAACGAATAGAGAGTTCAGGGGGGGATGACGACAAAGTCGCAATTAATGAAATATTTGAGGTTGCCTCTAATCAATGTAAAAGTGGTGCACTTGTTTTGTTCATCAAAGATATAGAGAAGGCAATGGTTGGGAACACGGATGTTTTGAAAAGTAAATTTGAAACCCTGCCACAGAATATTGTGGTAATTGGCTCAAATACTCAGCTGGACAGTCGTAAGGATAAGACCCATCCTGGGGGACTTTTGTTTACGAAGTTTGGGAGCAATCAGACAGCTCTACTTGATCTTGCTTTTCCGGATAACTTTAGTAAACTACATGATAGGAGCAAAGAAAGCTCCAAAGTAACGAAGCAACTCGGCCGCCTTTTCCCAAACAAAGTGACAATACAGCTGCCTCAGGATGAGGCTTTACTTTCTGACTGGAAGAAGCAGTTAGATCGTGATATTGAAACTATGAAAGCACAATCCAATGTTGTCATGCTTCGTTCGGTTCTCAAAAGAATAGGATGGGATTGTTCGGACCTTGAGACTATTTGCATCAAAGATCAAACCCTAACCAGTGAAAATGTGGAGAAGATCATTGGCTGGGCTATAAGTTACCATTTTATGCATTCATTTGAAGCTTCCACCCAAGACGTAAAGCGTGTGATATCTGCAGAAAGCATTAAGTATGGGTTTGACATTTTTCAAGGCATCCAAAATGAGAATAAGAACGTAAAAAAGTCGCTGAAGGATGTGGTTACCGAGAATGAATTTGAGAAAAAGCTGCTTGGTGATGTTATTCCCCCAACTGAACTTGGGGTCACATTTGAAGATATTGGAGCTTTAGAAAATGTGAAGGACACCTTGAAGGAATTGGTCATGCTTCCTCTTAAAAGGCCTGAACTGTTTTGTAAAGGACAACTGACTAAGCCTTGCAAGGGAATATTGCTTTTTGGGCCCCCTGGCACAGGAAAAACAATGCTTGCAAAGGCTGTAGCAACTGAAGCTGGAGCAAATTTCATAAACATTTCAATGTCCAGCATTACTTCCAAGTGGTTTGGCGAAGGAGAAAAATATGTCAAAGCAGTCTTCTCCCTGGCCAGCAAAATTGCTCCAAGTGTTATATTTGTTGACGAGGTTGATAGTATGTTAGGGAGACGTGAAAATCCCGGCGAGCACGAGGCTATGCGTAAAATGAAGAATGAGTTTATGGTCAATTGGGATGGTCTGCGTACAAAAGAAAAAGAGCGTATACTTGTTCTTGCCGCTACAAACAGACCTTTTGATCTTGATGAGGCTGTTATTAGGAGGCTTCCAAGGAGATTGATGGTTGATTTGCCGGATGCTCCGAATAGAGGAAAAATTTTGAGAGTCATTTTAGCGAAAGAAGATTTAGCACCCGATGTTGATTTGGAAGCAATAGCAAATATGACCGATGGATACTCAGGAAGTGACTTAAAGAATTTGTGTGTCACAGCAGCTCACTGCCCAATAAGGGAGATCTTGGAGAAGGAAAAGAAGGAGAGAAGCTTAGCATTGGCTGAGAACAAGCCTGAACCTGAATTGTGTAGCAGTGCAGACATTCGTCCCTTAAAGATGGAGGATTTTAGATATGCACATGAACAGGTGTGTGCAAGCGTGTCATCGGAGTCAACAAATATGAACGAGCTACAACAATGGAATGACCTCTATGGTGAAGGCGGATCGAGAAAAATGAGATCTTTAAGCTACTTCATGTGA 3759 0.423 MVETRRGSSSSSSKRPLSSPSPSNTKRSKVSEDASSTTLPSVPVKESETRNESGEPIIQQQQQQPSDLPETASLNVVDGDKDKAPSVPIQAEPLVSSHCPGETAEKSKVAVAPVVSSRKKRTAAKPIPKVPWGKLISQCSQNPHLSISDPIFTVGQGRQSNLVLKDPTVGNVLCKLSHIEQQHGGSSVALLEITGGKGVVQVNGKTYRRNARLILNGGDEVIFGISGKHAYIFQQLKNNNVSSAGIPPSVSILEAQSAAMNGMQVEARSGDPSAVAGASILASLSNIHKDLSLVSPPAKACKKQSADNSSPPSDHGDNGPDSEMKDTTSNDESAGFFPSGKDVPASSTTGNENPSLDTMDVHANVGSDVGKVTAANYELRPLLCMLTGSGTEFDLSGSIHKILEDRKELKDADTPTILASTRRQAFRDSLEQRILDAENIDVSFETFPYYLSNTTKNVLIASTYIHLKCNGFGKYASDLPSVCPRILLSGPSGSEIYQETLSKALAKHFGARLLIVDSLSLPGGTPSKEVDSAKESSKPERPSVLSKRSSQTSILHHKKPTSSVDAEIVGGSTLSSQAMLKQEVSTASSKATALKKGDRVKFVGNFPPAVSSLQNYSLSYSSISGRGPSYGFRGKVVLAFEDNDSSKIGVRFDKSIPDGNDLGGHIEDDHGFFCSANHLQRIESSGGDDDKVAINEIFEVASNQCKSGALVLFIKDIEKAMVGNTDVLKSKFETLPQNIVVIGSNTQLDSRKDKTHPGGLLFTKFGSNQTALLDLAFPDNFSKLHDRSKESSKVTKQLGRLFPNKVTIQLPQDEALLSDWKKQLDRDIETMKAQSNVVMLRSVLKRIGWDCSDLETICIKDQTLTSENVEKIIGWAISYHFMHSFEASTQDVKRVISAESIKYGFDIFQGIQNENKNVKKSLKDVVTENEFEKKLLGDVIPPTELGVTFEDIGALENVKDTLKELVMLPLKRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSKWFGEGEKYVKAVFSLASKIAPSVIFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKEKERILVLAATNRPFDLDEAVIRRLPRRLMVDLPDAPNRGKILRVILAKEDLAPDVDLEAIANMTDGYSGSDLKNLCVTAAHCPIREILEKEKKERSLALAENKPEPELCSSADIRPLKMEDFRYAHEQVCASVSSESTNMNELQQWNDLYGEGGSRKMRSLSYFM 1252
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre2g04386 1252 Gene3D - 131 244 - -
Trre2g04386 1252 Pfam AAA+ lid domain 1141 1177 IPR041569 -
Trre2g04386 1252 SUPERFAMILY SMAD/FHA domain 132 227 IPR008984 GO:0005515
Trre2g04386 1252 MobiDBLite consensus disorder prediction 342 360 - -
Trre2g04386 1252 Pfam ATPase family associated with various cellular activities (AAA) 988 1117 IPR003959 GO:0005524|GO:0016887
Trre2g04386 1252 MobiDBLite consensus disorder prediction 525 560 - -
Trre2g04386 1252 MobiDBLite consensus disorder prediction 1 71 - -
Trre2g04386 1252 Gene3D - 1120 1214 - -
Trre2g04386 1252 PANTHER AAA ATPASE, PUTATIVE (AFU_ORTHOLOGUE AFUA_2G12920)-RELATED-RELATED 424 1251 - -
Trre2g04386 1252 MobiDBLite consensus disorder prediction 543 559 - -
Trre2g04386 1252 FunFam p-loop nucleoside triphosphate hydrolase superfamily protein 946 1121 - -
Trre2g04386 1252 Gene3D - 946 1226 IPR027417 -
Trre2g04386 1252 MobiDBLite consensus disorder prediction 295 362 - -
Trre2g04386 1252 SMART AAA_5 984 1121 IPR003593 GO:0016887
Trre2g04386 1252 MobiDBLite consensus disorder prediction 302 316 - -
Trre2g04386 1252 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 947 1224 IPR027417 -
Trre2g04386 1252 MobiDBLite consensus disorder prediction 1 89 - -
Trre2g04386 1252 ProSitePatterns AAA-protein family signature. 1091 1110 IPR003960 GO:0005524|GO:0016887
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre2g04386 Trre-Chr2 51318325 51327943 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre2g04386 947 1193 Calmodulin-binding Proteins AT3G56690 40.476 9.17e-42 165
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre2g04386 - - gmx:100801477 1894.4