Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre2g04385 ATGGTTGAAACCCGTCGCGGTTCTTCTTCTTCTTCTTCTAAACGCCCTCTTTCTTCTCCTTCTCCTTCCAACACCAAACGATCCAAGGTTTCTGAAGATGCTTCATCTACCACCTTACCTTCTGTTCCGGTTAAAGAATCTGAGACAAGAAACGAATCTGGTGAACCTATCATACAACAACAACAACAACAACCCTCTGATCTACCTGAAACGGCGTCGTTGAACGTTGTTGATGGTGATAAAGATAAGGCTCCATCTGTGCCAATTCAAGCTGAACCTTTGGTGTCTTCTCACTGTCCAGGTGAAACTGCTGAGAAATCAAAGGTGGCGGTTGCGCCGGTTGTTTCTTCTCGGAAAAAACGGACGGCTGCTAAACCAATTCCTAAGGTTCCTTGGGGGAAGCTTATATCTCAATGTTCTCAGAATCCTCACCTGTCCATTAGTGATCCAATCTTCACTGTTGGTCAAGGTCGTCAGAGTAATTTGGTGCTTAAAGATCCAACCGTTGGTAATGTTTTGTGCAAGTTGAGCCACATAGAGCAGCAACATGGAGGTTCATCAGTTGCCCTGCTGGAAATCACAGGGGGTAAAGGTGTTGTTCAAGTCAATGGGAAGACTTACCGAAGGAATGCCCGACTGATTTTAAATGGAGGCGATGAGGTGATCTTTGGCATTTCAGGAAAACATGCTTATATCTTTCAGCAGCTCAAAAATAACAATGTTTCTAGTGCTGGTATACCTCCTTCTGTGAGTATTTTAGAAGCCCAGAGTGCTGCAATGAATGGGATGCAAGTTGAAGCTAGATCTGGAGACCCGTCGGCTGTTGCAGGAGCATCAATATTGGCCTCTCTATCTAATATTCACAAAGATTTATCTCTTGTTTCCCCTCCAGCTAAAGCATGCAAGAAACAGAGTGCTGATAATTCATCACCACCTTCTGACCATGGGGATAATGGTCCGGACAGTGAAATGAAAGATACCACAAGTAATGATGAATCGGCTGGATTTTTTCCTTCTGGTAAAGATGTTCCTGCATCCTCTACCACTGGTAATGAAAATCCTAGCCTTGACACCATGGATGTGCATGCCAATGTGGGCTCAGATGTTGGGAAGGTGACTGCTGCTAATTATGAATTGAGGCCGTTACTGTGCATGCTTACTGGCTCAGGAACGGAATTTGATTTAAGTGGCAGCATTCACAAGATTTTAGAAGATCGAAAGGAACTTAAAGATGCTGATACACCTACAATATTGGCATCCACTAGGCGACAAGCATTTAGAGACAGCCTAGAACAGAGAATCCTCGATGCTGAGAATATTGATGTCTCTTTTGAAACTTTCCCATATTATCTAAGCAATACAACAAAGAATGTGTTGATTGCTTCTACATATATTCATTTGAAGTGCAATGGCTTTGGAAAATACGCTTCAGATCTCCCGTCGGTGTGCCCACGGATATTATTATCTGGTCCTTCAGGTTCGGAAATATACCAGGAGACTTTGTCCAAGGCACTTGCAAAGCATTTTGGTGCTAGGCTACTGATTGTGGATTCACTTTCGCTACCCGGTGGAACACCATCAAAGGAAGTTGATTCTGCCAAAGAAAGTTCAAAGCCCGAAAGGCCATCTGTTTTGTCTAAGAGAAGTAGCCAGACTTCTATATTACATCATAAGAAACCCACTTCTAGTGTTGATGCTGAAATTGTTGGTGGTTCTACATTAAGTTCGCAGGCTATGCTGAAGCAAGAGGTTTCTACTGCATCATCAAAAGCCACTGCTCTTAAAAAAGGTGATCGAGTAAAATTTGTCGGTAACTTTCCACCTGCTGTGTCGTCACTACAAAATTATTCTTTAAGGGGACCAAGCTATGGCTTCCGGGGCAAAGTTGTACTTGCTTTTGAAGACAACGATTCTTCAAAAATTGGGGTCAGATTTGATAAATCAATTCCAGATGGCAATGATCTTGGAGGCCATATCGAAGATGATCATGGGTTCTTTTGTTCTGCAAACCATTTACAACGAATAGAGAGTTCAGGGGGGGATGACGACAAAGTCGCAATTAATGAAATATTTGAGGTTGCCTCTAATCAATGTAAAAGTGGTGCACTTGTTTTGTTCATCAAAGATATAGAGAAGGCAATGGTTGGGAACACGGATGTTTTGAAAAGTAAATTTGAAACCCTGCCACAGAATATTGTGGTAATTGGCTCAAATACTCAGCTGGACAGTCGTAAGGATAAGACCCATCCTGGGGGACTTTTGTTTACGAAGTTTGGGAGCAATCAGACAGCTCTACTTGATCTTGCTTTTCCGGATAACTTTAGTAAACTACATGATAGGAGCAAAGAAAGCTCCAAAGTAACGAAGCAACTCGGCCGCCTTTTCCCAAACAAAGTGACAATACAGCTGCCTCAGGATGAGGCTTTACTTTCTGACTGGAAGAAGCAGTTAGATCGTGATATTGAAACTATGAAAGCACAATCCAATGTTGTCATGCTTCGTTCGGTTCTCAAAAGAATAGGATGGGATTGTTCGGACCTTGAGACTATTTGCATCAAAGATCAAACCCTAACCAGTGAAAATGTGGAGAAGATCATTGGCTGGGCTATAAGTTACCATTTTATGCATTCATTTGAAGCTTCCACCCAAGACGTAAAGCGTGTGATATCTGCAGAAAGCATTAAGTATGGGTTTGACATTTTTCAAGGCATCCAAAATGAGAATAAGAACGTAAAAAAGTCGCTGAAGGATGTGGTTACCGAGAATGAATTTGAGAAAAAGCTGCTTGGTGATGTTATTCCCCCAACTGAACTTGGGGTCACATTTGAAGATATTGGAGCTTTAGAAAATGTGAAGGACACCTTGAAGGAATTGGTCATGCTTCCTCTTAAAAGGCCTGAACTGTTTTGTAAAGGACAACTGACTAAGCCTTGCAAGGGAATATTGCTTTTTGGGCCCCCTGGCACAGGAAAAACAATGCTTGCAAAGGCTGTAGCAACTGAAGCTGGAGCAAATTTCATAAACATTTCAATGTCCAGCATTACTTCCAAGTGGTTTGGCGAAGGAGAAAAATATGTCAAAGCAGTCTTCTCCCTGGCCAGCAAAATTGCTCCAAGTGTTATATTTGTTGACGAGGTTGATAGTATGTTAGGGAGACGTGAAAATCCCGGCGAGCACGAGGCTATGCGTAAAATGAAGAATGAGTTTATGGTCAATTGGGATGGTCTGCGTACAAAAGAAAAAGAGCGTATACTTGTTCTTGCCGCTACAAACAGACCTTTTGATCTTGATGAGGCTGTTATTAGGAGGCTTCCAAGGAGATTGATGGTTGATTTGCCGGATGCTCCGAATAGAGGAAAAATTTTGAGAGTCATTTTAGCGAAAGAAGATTTAGCACCCGATGTTGATTTGGAAGCAATAGCAAATATGACCGATGGATACTCAGGAAGTGACTTAAAGAATTTGTGTGTCACAGCAGCTCACTGCCCAATAAGGGAGATCTTGGAGAAGGAAAAGAAGGAGAGAAGCTTAGCATTGGCTGAGAACAAGCCTGAACCTGAATTGTGTAGCAGTGCAGACATTCGTCCCTTAAAGATGGAGGATTTTAGATATGCACATGAACAGGTGTGTGCAAGCGTGTCATCGGAGTCAACAAATATGAACGAGCTACAACAATGGAATGACCTCTATGGTGAAGGCGGATCGAGAAAAATGAGATCTTTAAGCTACTTCATGTGA 3738 0.423 MVETRRGSSSSSSKRPLSSPSPSNTKRSKVSEDASSTTLPSVPVKESETRNESGEPIIQQQQQQPSDLPETASLNVVDGDKDKAPSVPIQAEPLVSSHCPGETAEKSKVAVAPVVSSRKKRTAAKPIPKVPWGKLISQCSQNPHLSISDPIFTVGQGRQSNLVLKDPTVGNVLCKLSHIEQQHGGSSVALLEITGGKGVVQVNGKTYRRNARLILNGGDEVIFGISGKHAYIFQQLKNNNVSSAGIPPSVSILEAQSAAMNGMQVEARSGDPSAVAGASILASLSNIHKDLSLVSPPAKACKKQSADNSSPPSDHGDNGPDSEMKDTTSNDESAGFFPSGKDVPASSTTGNENPSLDTMDVHANVGSDVGKVTAANYELRPLLCMLTGSGTEFDLSGSIHKILEDRKELKDADTPTILASTRRQAFRDSLEQRILDAENIDVSFETFPYYLSNTTKNVLIASTYIHLKCNGFGKYASDLPSVCPRILLSGPSGSEIYQETLSKALAKHFGARLLIVDSLSLPGGTPSKEVDSAKESSKPERPSVLSKRSSQTSILHHKKPTSSVDAEIVGGSTLSSQAMLKQEVSTASSKATALKKGDRVKFVGNFPPAVSSLQNYSLRGPSYGFRGKVVLAFEDNDSSKIGVRFDKSIPDGNDLGGHIEDDHGFFCSANHLQRIESSGGDDDKVAINEIFEVASNQCKSGALVLFIKDIEKAMVGNTDVLKSKFETLPQNIVVIGSNTQLDSRKDKTHPGGLLFTKFGSNQTALLDLAFPDNFSKLHDRSKESSKVTKQLGRLFPNKVTIQLPQDEALLSDWKKQLDRDIETMKAQSNVVMLRSVLKRIGWDCSDLETICIKDQTLTSENVEKIIGWAISYHFMHSFEASTQDVKRVISAESIKYGFDIFQGIQNENKNVKKSLKDVVTENEFEKKLLGDVIPPTELGVTFEDIGALENVKDTLKELVMLPLKRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSKWFGEGEKYVKAVFSLASKIAPSVIFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKEKERILVLAATNRPFDLDEAVIRRLPRRLMVDLPDAPNRGKILRVILAKEDLAPDVDLEAIANMTDGYSGSDLKNLCVTAAHCPIREILEKEKKERSLALAENKPEPELCSSADIRPLKMEDFRYAHEQVCASVSSESTNMNELQQWNDLYGEGGSRKMRSLSYFM 1245
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre2g04385 1245 SUPERFAMILY SMAD/FHA domain 132 227 IPR008984 GO:0005515
Trre2g04385 1245 PANTHER AAA ATPASE, PUTATIVE (AFU_ORTHOLOGUE AFUA_2G12920)-RELATED-RELATED 424 1244 - -
Trre2g04385 1245 Pfam ATPase family associated with various cellular activities (AAA) 981 1110 IPR003959 GO:0005524|GO:0016887
Trre2g04385 1245 MobiDBLite consensus disorder prediction 342 360 - -
Trre2g04385 1245 MobiDBLite consensus disorder prediction 1 71 - -
Trre2g04385 1245 MobiDBLite consensus disorder prediction 543 559 - -
Trre2g04385 1245 MobiDBLite consensus disorder prediction 295 362 - -
Trre2g04385 1245 Pfam AAA+ lid domain 1134 1170 IPR041569 -
Trre2g04385 1245 FunFam p-loop nucleoside triphosphate hydrolase superfamily protein 939 1114 - -
Trre2g04385 1245 ProSitePatterns AAA-protein family signature. 1084 1103 IPR003960 GO:0005524|GO:0016887
Trre2g04385 1245 MobiDBLite consensus disorder prediction 302 316 - -
Trre2g04385 1245 MobiDBLite consensus disorder prediction 525 561 - -
Trre2g04385 1245 Gene3D - 1113 1207 - -
Trre2g04385 1245 Gene3D - 131 244 - -
Trre2g04385 1245 Gene3D - 939 1219 IPR027417 -
Trre2g04385 1245 SMART AAA_5 977 1114 IPR003593 GO:0016887
Trre2g04385 1245 MobiDBLite consensus disorder prediction 1 89 - -
Trre2g04385 1245 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 940 1217 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre2g04385 Trre-Chr2 51318325 51327943 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre2g04385 940 1186 Calmodulin-binding Proteins AT3G56690 40.476 1.05e-41 165
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre2g04385 - - gmx:100801477 1910.58