Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre2g04383 ATGGTTGAAACCCGTCGCGGTTCTTCTTCTTCTTCTTCTAAACGCCCTCTTTCTTCTCCTTCTCCTTCCAACACCAAACGATCCAAGGTTTCTGAAGATGCTTCATCTACCACCTTACCTTCTGTTCCGGTTAAAGAATCTGAGACAAGAAACGAATCTGGTGAACCTATCATACAACAACAACAACAACAACCCTCTGATCTACCTGAAACGGCGTCGTTGAACGTTGTTGATGGTGATAAAGATAAGGCTCCATCTGTGCCAATTCAAGCTGAACCTTTGGTGTCTTCTCACTGTCCAGGTGAAACTGCTGAGAAATCAAAGGTGGCGGTTGCGCCGGTTGTTTCTTCTCGGAAAAAACGGACGGCTGCTAAACCAATTCCTAAGGTTCCTTGGGGGAAGCTTATATCTCAATGTTCTCAGAATCCTCACCTGTCCATTAGTGATCCAATCTTCACTGTTGGTCAAGGTCGTCAGAGTAATTTGGTGCTTAAAGATCCAACCGTTGGTAATGTTTTGTGCAAGTTGAGCCACATAGAGCAACATGGAGGTTCATCAGTTGCCCTGCTGGAAATCACAGGGGGTAAAGGTGTTGTTCAAGTCAATGGGAAGACTTACCGAAGGAATGCCCGACTGATTTTAAATGGAGGCGATGAGGTGATCTTTGGCATTTCAGGAAAACATGCTTATATCTTTCAGCAGCTCAAAAATAACAATGTTTCTAGTGCTGGTATACCTCCTTCTGTGAGTATTTTAGAAGCCCAGAGTGCTGCAATGAATGGGATGCAAGTTGAAGCTAGATCTGGAGACCCGTCGGCTGTTGCAGGAGCATCAATATTGGCCTCTCTATCTAATATTCACAAAGATTTATCTCTTGTTTCCCCTCCAGCTAAAGCATGCAAGAAACAGAGTGCTGATAATTCATCACCACCTTCTGACCATGGGGATAATGGTCCGGACAGTGAAATGAAAGATACCACAAGTAATGATGAATCGGCTGGATTTTTTCCTTCTGGTAAAGATGTTCCTGCATCCTCTACCACTGGTAATGAAAATCCTAGCCTTGACACCATGGATGTGCATGCCAATGTGGGCTCAGATGTTGGGAAGGTGACTGCTGCTAATTATGAATTGAGGCCGTTACTGTGCATGCTTACTGGCTCAGGAACGGAATTTGATTTAAGTGGCAGCATTCACAAGATTTTAGAAGATCGAAAGGAACTTAAAGATGCTGATACACCTACAATATTGGCATCCACTAGGCGACAAGCATTTAGAGACAGCCTAGAACAGAGAATCCTCGATGCTGAGAATATTGATGTCTCTTTTGAAACTTTCCCATATTATCTAAGCAATACAACAAAGAATGTGTTGATTGCTTCTACATATATTCATTTGAAGTGCAATGGCTTTGGAAAATACGCTTCAGATCTCCCGTCGGTGTGCCCACGGATATTATTATCTGGTCCTTCAGGTTCGGAAATATACCAGGAGACTTTGTCCAAGGCACTTGCAAAGCATTTTGGTGCTAGGCTACTGATTGTGGATTCACTTTCGCTACCCGGTGGAACACCATCAAAGGAAGTTGATTCTGCCAAAGAAAGTTCAAAGCCCGAAAGGCCATCTGTTTTGTCTAAGAGAAGTAGCCAGACTTCTATATTACATCATAAGAAACCCACTTCTAGTGTTGATGCTGAAATTGTTGGTGGTTCTACATTAAGTTCGCAGGCTATGCTGAAGCAAGAGGTTTCTACTGCATCATCAAAAGCCACTGCTCTTAAAAAAGGTGATCGAGTAAAATTTGTCGGTAACTTTCCACCTGCTGTGTCGTCACTACAAAATTATTCTTTAAGGGGACCAAGCTATGGCTTCCGGGGCAAAGTTGTACTTGCTTTTGAAGACAACGATTCTTCAAAAATTGGGGTCAGATTTGATAAATCAATTCCAGATGGCAATGATCTTGGAGGCCATATCGAAGATGATCATGGGTTCTTTTGTTCTGCAAACCATTTACAACGAATAGAGAGTTCAGGGGGGGATGACGACAAAGTCGCAATTAATGAAATATTTGAGGTTGCCTCTAATCAATGTAAAAGTGGTGCACTTGTTTTGTTCATCAAAGATATAGAGAAGGCAATGGTTGGGAACACGGATGTTTTGAAAAGTAAATTTGAAACCCTGCCACAGAATATTGTGGTAATTGGCTCAAATACTCAGCTGGACAGTCGTAAGGATAAGACCCATCCTGGGGGACTTTTGTTTACGAAGTTTGGGAGCAATCAGACAGCTCTACTTGATCTTGCTTTTCCGGATAACTTTAGTAAACTACATGATAGGAGCAAAGAAAGCTCCAAAGTAACGAAGCAACTCGGCCGCCTTTTCCCAAACAAAGTGACAATACAGCTGCCTCAGGATGAGGCTTTACTTTCTGACTGGAAGAAGCAGTTAGATCGTGATATTGAAACTATGAAAGCACAATCCAATGTTGTCATGCTTCGTTCGGTTCTCAAAAGAATAGGATGGGATTGTTCGGACCTTGAGACTATTTGCATCAAAGATCAAACCCTAACCAGTGAAAATGTGGAGAAGATCATTGGCTGGGCTATAAGTTACCATTTTATGCATTCATTTGAAGCTTCCACCCAAGACGTAAAGCGTGTGATATCTGCAGAAAGCATTAAGTATGGGTTTGACATTTTTCAAGGCATCCAAAATGAGAATAAGAACGTAAAAAAGTCGCTGAAGGATGTGGTTACCGAGAATGAATTTGAGAAAAAGCTGCTTGGTGATGTTATTCCCCCAACTGAACTTGGGGTCACATTTGAAGATATTGGAGCTTTAGAAAATGTGAAGGACACCTTGAAGGAATTGGTCATGCTTCCTCTTAAAAGGCCTGAACTGTTTTGTAAAGGACAACTGACTAAGCCTTGCAAGGGAATATTGCTTTTTGGGCCCCCTGGCACAGGAAAAACAATGCTTGCAAAGGCTGTAGCAACTGAAGCTGGAGCAAATTTCATAAACATTTCAATGTCCAGCATTACTTCCAAGTGGTTTGGCGAAGGAGAAAAATATGTCAAAGCAGTCTTCTCCCTGGCCAGCAAAATTGCTCCAAGTGTTATATTTGTTGACGAGGTTGATAGTATGTTAGGGAGACGTGAAAATCCCGGCGAGCACGAGGCTATGCGTAAAATGAAGAATGAGTTTATGGTCAATTGGGATGGTCTGCGTACAAAAGAAAAAGAGCGTATACTTGTTCTTGCCGCTACAAACAGACCTTTTGATCTTGATGAGGCTGTTATTAGGAGGCTTCCAAGGAGATTGATGGTTGATTTGCCGGATGCTCCGAATAGAGGAAAAATTTTGAGAGTCATTTTAGCGAAAGAAGATTTAGCACCCGATGTTGATTTGGAAGCAATAGCAAATATGACCGATGGATACTCAGGAAGTGACTTAAAGAATTTGTGTGTCACAGCAGCTCACTGCCCAATAAGGGAGATCTTGGAGAAGGAAAAGAAGGAGAGAAGCTTAGCATTGGCTGAGAACAAGCCTGAACCTGAATTGTGTAGCAGTGCAGACATTCGTCCCTTAAAGATGGAGGATTTTAGATATGCACATGAACAGGTGTGTGCAAGCGTGTCATCGGAGTCAACAAATATGAACGAGCTACAACAATGGAATGACCTCTATGGTGAAGGCGGATCGAGAAAAATGAGATCTTTAAGCTACTTCATGTGA 3735 0.4228 MVETRRGSSSSSSKRPLSSPSPSNTKRSKVSEDASSTTLPSVPVKESETRNESGEPIIQQQQQQPSDLPETASLNVVDGDKDKAPSVPIQAEPLVSSHCPGETAEKSKVAVAPVVSSRKKRTAAKPIPKVPWGKLISQCSQNPHLSISDPIFTVGQGRQSNLVLKDPTVGNVLCKLSHIEQHGGSSVALLEITGGKGVVQVNGKTYRRNARLILNGGDEVIFGISGKHAYIFQQLKNNNVSSAGIPPSVSILEAQSAAMNGMQVEARSGDPSAVAGASILASLSNIHKDLSLVSPPAKACKKQSADNSSPPSDHGDNGPDSEMKDTTSNDESAGFFPSGKDVPASSTTGNENPSLDTMDVHANVGSDVGKVTAANYELRPLLCMLTGSGTEFDLSGSIHKILEDRKELKDADTPTILASTRRQAFRDSLEQRILDAENIDVSFETFPYYLSNTTKNVLIASTYIHLKCNGFGKYASDLPSVCPRILLSGPSGSEIYQETLSKALAKHFGARLLIVDSLSLPGGTPSKEVDSAKESSKPERPSVLSKRSSQTSILHHKKPTSSVDAEIVGGSTLSSQAMLKQEVSTASSKATALKKGDRVKFVGNFPPAVSSLQNYSLRGPSYGFRGKVVLAFEDNDSSKIGVRFDKSIPDGNDLGGHIEDDHGFFCSANHLQRIESSGGDDDKVAINEIFEVASNQCKSGALVLFIKDIEKAMVGNTDVLKSKFETLPQNIVVIGSNTQLDSRKDKTHPGGLLFTKFGSNQTALLDLAFPDNFSKLHDRSKESSKVTKQLGRLFPNKVTIQLPQDEALLSDWKKQLDRDIETMKAQSNVVMLRSVLKRIGWDCSDLETICIKDQTLTSENVEKIIGWAISYHFMHSFEASTQDVKRVISAESIKYGFDIFQGIQNENKNVKKSLKDVVTENEFEKKLLGDVIPPTELGVTFEDIGALENVKDTLKELVMLPLKRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSKWFGEGEKYVKAVFSLASKIAPSVIFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKEKERILVLAATNRPFDLDEAVIRRLPRRLMVDLPDAPNRGKILRVILAKEDLAPDVDLEAIANMTDGYSGSDLKNLCVTAAHCPIREILEKEKKERSLALAENKPEPELCSSADIRPLKMEDFRYAHEQVCASVSSESTNMNELQQWNDLYGEGGSRKMRSLSYFM 1244
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre2g04383 1244 SUPERFAMILY SMAD/FHA domain 132 226 IPR008984 GO:0005515
Trre2g04383 1244 MobiDBLite consensus disorder prediction 524 560 - -
Trre2g04383 1244 ProSitePatterns AAA-protein family signature. 1083 1102 IPR003960 GO:0005524|GO:0016887
Trre2g04383 1244 Gene3D - 131 243 - -
Trre2g04383 1244 PANTHER AAA ATPASE, PUTATIVE (AFU_ORTHOLOGUE AFUA_2G12920)-RELATED-RELATED 423 1243 - -
Trre2g04383 1244 SMART AAA_5 976 1113 IPR003593 GO:0016887
Trre2g04383 1244 MobiDBLite consensus disorder prediction 1 71 - -
Trre2g04383 1244 MobiDBLite consensus disorder prediction 301 315 - -
Trre2g04383 1244 Gene3D - 1112 1206 - -
Trre2g04383 1244 FunFam p-loop nucleoside triphosphate hydrolase superfamily protein 938 1113 - -
Trre2g04383 1244 MobiDBLite consensus disorder prediction 542 558 - -
Trre2g04383 1244 MobiDBLite consensus disorder prediction 294 361 - -
Trre2g04383 1244 Pfam AAA+ lid domain 1133 1169 IPR041569 -
Trre2g04383 1244 Pfam ATPase family associated with various cellular activities (AAA) 980 1109 IPR003959 GO:0005524|GO:0016887
Trre2g04383 1244 MobiDBLite consensus disorder prediction 1 89 - -
Trre2g04383 1244 MobiDBLite consensus disorder prediction 341 359 - -
Trre2g04383 1244 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 939 1216 IPR027417 -
Trre2g04383 1244 Gene3D - 938 1218 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre2g04383 Trre-Chr2 51318325 51327943 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre2g04383 939 1185 Calmodulin-binding Proteins AT3G56690 40.476 1.02e-41 165
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre2g04383 - - gmx:100801477 1910.96