Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre2g04381 ATGGTTGAAACTAGAAGCAGTTCTTCTTCTTCCAAACGTGCTCTTTCTTCTCCTTCATCATCTCCTTCAAACACAAAACGATCCAAGGTCACAGGTGATGTTTCATCTGCTTCTAATCCCTCACCACCGGTCAACGAATCTGGAGAAAGAGAGATACGGCCATCTGATCTACCTCAAACGGAGAAGGCTGTTGATGGTGATAACAACAAGTCTTCTGAGGCTTTGGTGTCTCCACCTCAGTGTTTAGAATCAGGTGAAATTGAGGAGAAATCAAGGATGTTACCGCCACTAGCTCGGCCGAAAAAACGTTGCACGAAATTGAATCCTAAGGCTGCTTGGGGGAAGCTCATTTCTCAATCTTCTGAGAATCCTCACCTGTCAATGTCAGATCCTATCTACACTGCTGGTCAAGGTGGTCACTGTAATTTATGCCTTAAAGATCCCACTCTTAGTAATGTGTTGTGCAAATTGAGCCACATAGAGTATGGAGGTTCGTCTGTTGCGTTGCTGGAAGTCATCGGGAGTAAAGGTGTTGTTAAAGTCAACGGAAAGACGTATGGGAATAAATCCCGTCTTATTTTAAGCGGAGGTGATGAAGTCGTCTTCGGTGTTTCTGGCAAGCATGCTTATATCTTTCAGCAGCTCGATAATAATATCACTACTCCCAACATACCTTCTCGTGTGAATATTTTAGAAGCCCAGGGTGCTTCAATAACTGGAACACAAGTTGATGCAAGATCTGGTGACCTGTCGACTGTTGCTGGAGATTCAATATTGGCTTCTGTTTCTGTTAATGAAGATTTATCTACCATTCCTCTTTCTGTTAACGCTGGCACAAACATGCAGCAGCAGACGGATGTTTCATCACTACCTGCTGGCAACGGGGATGATAAGGCAGGCGTTGATATGAAGCACAGCATCATCAATAATGAACTGGATGGAGTTTCTTCTGCCGAGAAAACTGGCCGTTCATCCTCTACCACCGTTGAGGAAGATCCTAAGGATGACACTGTAGAAGTCAATGCCATTGTGGATGCAGATGTTGGGAAGATGACTGCTGCTACTTGCAAATTGAGACCATTATTGCACAAGCTTTCTGGATCATGTCCTGAATTTGATTTGAGTGGCAACATTGCCAAGATATTGGAAGAACGCAAGGGATTATTGGAAGAACGCAAGGGATTAAAGGAACTCCTTAAAGATGTTGGTACCTCAACAATACTGGCATCGCCCAAGCAACAAGCTATTAAAGATAGCTTACAAAAAAAAGATAGCTTACAGCTGAGAATTCTCAATGCTAATAATATTGATGTTTCATTTGAAAATTTCCCATATTATCTAAGTGATACAACAAAGAACGTTTTGATCGCTTCTGCATACATTCATTTGAAGTGCAATGCATCTGGAAAATATGTTTCAGAGCTTCCGTCGCTGTCTCCACGGATTTTGTTATCTGGCCCTGCAGGCTCTGAAATATATCAGGAGACTCTGTCCAAGGCACTTGCAAAGCATTTTGGTGCTTGGCTACTAATTGTGGATTCTCTTTCACCTCCTGGTCGAACACCATTGAAGGAAGCTGATTCTACTAAAGAAAGTTCAAGGCCTGAAAGACCGTCTGTGTTTACTAAGAGAAGTACTCCGGCTGCTACAATACATATACAGTCTAAGAAACCGACTTCTAGTGTTGATGCCCAAATTATTGGCGGATCTGCATCAAGTTCACAGTTTATACTGAAGCAAGAAGTTTCTACGACATCGTCAAAAGGCAGTACTCTTAAAACAGGTGATCGGGTAAAATATGTTGGTTCTGCTGCCTCATCACCACAAGTTTTTCCTTCAAGAGGACCAAGTTATGGCAGCCGGGGCAAAGTTCTCCTTGCTTTTGAAAATAACGGTGCTTCAAAAATTGGAGTTAGATTTGAGAAACCAATTCCAGATGGAAATGATCTTGGAGGCCTCTGCGAAGATGACCGTGGCTTCTTTTGTCCCGCCAATCATTTGATACTGGTAGATGGTTCTGGAGGGGATGATTCTGGCAAAGCTGCTATTAATGAAATCTTTGAGATTGCCTCTAATCTGAGTAAAACTAGAGCACTAGTGTTGTTGATTAAAGATATAGAGAAGGGTGTGGCTGGAAACTCGGAAGTTTTGAAAAGTAAATTCGGAAGCTTGCCGCAAAATGTTGTAGTAATTGGTTCACATATCCAACCAGACAGTCGTAAGGAGAAGACCCAACCTGGCAGCCTTCTGTTTACCAAATTTGGAGGCAACCAGACAGCACTACTCGATCTTGCTTTTCCGGATAATTTTACTAGACTGCATGATAGGAGCAAAGAAACCCCCAAAGTAATGAAGCAACTCAACAGGCTCTTCCCAAACAAAGTTACAATTCAGCTACCTCAGGATGAGGCTTTAGTTTCTGATTGGAAGCAGCACCTAGAACGTGACATAGAAACTATGAAAGCTCAGTCCAATGTTGTCAGCATTCGCTTAGTCCTCAACAGGTTTGGACTGGATTGCCCTGACCTTGAGACTCTTTCCATCAAAGATCAAACTCTGACAACTGAAAATGTGGAGAAGATTATTGGTTGGGCTATTAGTTACCATTTTATGCATTCATCTGAAACTTCTACCAAAGAATCAAAGCCTGTGATATCTGCTGAGAGTATTCACTATGGCTTCAACATTCTACAGGGCATTCAAAATGAGAACAAGAGCGTAAAAAAGTCACTGAAGGACGTAGTTACTGAGAATGAATTTGAGAAAAAACTGCTTGGTGATGTTATTCCACCAACTGATATTGGGGTCTCATTTGATGATATTGGAGCTTTAGAAAATGTAAAGGAAACCTTAAAGGAATTGGTTATGCTTCCTCTTCAAAGGCCTGAATTATTTTGCAAAGGACAGCTAACTAAGCCTTGCAAGGGAATATTACTTTTTGGCCCCCCTGGCACGGGGAAAACAATGCTTGCAAAGGCTGTAGCAACTGAAGCAGGAGCAAATTTTATTAACATCTCCATGTCAAGCATTACATCGAAGTGGTTTGGTGAAGGAGAAAAATATGTCAAAGCAGTCTTTTCTCTAGCCAGCAAAATTGCCCCAAGCGTTATTTTTGTTGATGAGGTTGATAGTATGTTAGGGAGACGTGAAAATCCTGGTGAGCATGAAGCTATGCGTAAAATGAAGAATGAGTTTATGGTTAATTGGGATGGTCTACGTACAAAAGATAGAGAGCGTGTACTTGTTCTTGCTGCCACAAATAGGCCTTTTGATCTTGATGAGGCTGTTATTAGGAGGCTTCCGCGAAGATTGATGGTTAATTTGCCAGATGCAACAAACAGAGCAAAAATTATGAGAGTCATTTTAGCAAAAGAAGATTTGGCGGCTGATGTTGATTTAGAAGCATTAGCTAATATGACTGATGGATACTCTGGAAGTGACCTAAAGAATCTGTGTGTTACAGCAGCGCACTGTCCAATACGAGAGATCTTGGAGAAGGAAAAAAAGGAGAGAAGCTCTGCATTGGCTGAGAACAAACCTCTACCTGGGTTGTGTAGCAGTGCAGACATTCGTCCGTTAAAGATGGAAGATTTTAAATATGCACATGAGCAGGTGTGCGCAAGCGTGTCATCGGATTCAACGAATATGACTGAATTAGTCCAATGGAATGACCTCTATGGTGAAGGTGGATCAAGAAAAAAGACATCTTTGAGCTATTTCATGTAA 3726 0.4179 MVETRSSSSSSKRALSSPSSSPSNTKRSKVTGDVSSASNPSPPVNESGEREIRPSDLPQTEKAVDGDNNKSSEALVSPPQCLESGEIEEKSRMLPPLARPKKRCTKLNPKAAWGKLISQSSENPHLSMSDPIYTAGQGGHCNLCLKDPTLSNVLCKLSHIEYGGSSVALLEVIGSKGVVKVNGKTYGNKSRLILSGGDEVVFGVSGKHAYIFQQLDNNITTPNIPSRVNILEAQGASITGTQVDARSGDLSTVAGDSILASVSVNEDLSTIPLSVNAGTNMQQQTDVSSLPAGNGDDKAGVDMKHSIINNELDGVSSAEKTGRSSSTTVEEDPKDDTVEVNAIVDADVGKMTAATCKLRPLLHKLSGSCPEFDLSGNIAKILEERKGLLEERKGLKELLKDVGTSTILASPKQQAIKDSLQKKDSLQLRILNANNIDVSFENFPYYLSDTTKNVLIASAYIHLKCNASGKYVSELPSLSPRILLSGPAGSEIYQETLSKALAKHFGAWLLIVDSLSPPGRTPLKEADSTKESSRPERPSVFTKRSTPAATIHIQSKKPTSSVDAQIIGGSASSSQFILKQEVSTTSSKGSTLKTGDRVKYVGSAASSPQVFPSRGPSYGSRGKVLLAFENNGASKIGVRFEKPIPDGNDLGGLCEDDRGFFCPANHLILVDGSGGDDSGKAAINEIFEIASNLSKTRALVLLIKDIEKGVAGNSEVLKSKFGSLPQNVVVIGSHIQPDSRKEKTQPGSLLFTKFGGNQTALLDLAFPDNFTRLHDRSKETPKVMKQLNRLFPNKVTIQLPQDEALVSDWKQHLERDIETMKAQSNVVSIRLVLNRFGLDCPDLETLSIKDQTLTTENVEKIIGWAISYHFMHSSETSTKESKPVISAESIHYGFNILQGIQNENKSVKKSLKDVVTENEFEKKLLGDVIPPTDIGVSFDDIGALENVKETLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSKWFGEGEKYVKAVFSLASKIAPSVIFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDRERVLVLAATNRPFDLDEAVIRRLPRRLMVNLPDATNRAKIMRVILAKEDLAADVDLEALANMTDGYSGSDLKNLCVTAAHCPIREILEKEKKERSSALAENKPLPGLCSSADIRPLKMEDFKYAHEQVCASVSSDSTNMTELVQWNDLYGEGGSRKKTSLSYFM 1241
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre2g04381 1241 MobiDBLite consensus disorder prediction 524 538 - -
Trre2g04381 1241 Gene3D - 935 1215 IPR027417 -
Trre2g04381 1241 Gene3D - 1109 1203 - -
Trre2g04381 1241 Pfam AAA+ lid domain 1130 1165 IPR041569 -
Trre2g04381 1241 MobiDBLite consensus disorder prediction 62 78 - -
Trre2g04381 1241 MobiDBLite consensus disorder prediction 1 103 - -
Trre2g04381 1241 Pfam ATPase family associated with various cellular activities (AAA) 977 1106 IPR003959 GO:0005524|GO:0016887
Trre2g04381 1241 Coils Coil 378 398 - -
Trre2g04381 1241 CDD RecA-like_ATAD1 940 1106 - -
Trre2g04381 1241 MobiDBLite consensus disorder prediction 520 545 - -
Trre2g04381 1241 FunFam p-loop nucleoside triphosphate hydrolase superfamily protein 935 1111 - -
Trre2g04381 1241 PANTHER AAA ATPASE, PUTATIVE (AFU_ORTHOLOGUE AFUA_2G12920)-RELATED-RELATED 423 1240 - -
Trre2g04381 1241 MobiDBLite consensus disorder prediction 1 45 - -
Trre2g04381 1241 SUPERFAMILY SMAD/FHA domain 113 206 IPR008984 GO:0005515
Trre2g04381 1241 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 936 1216 IPR027417 -
Trre2g04381 1241 Gene3D - 112 221 - -
Trre2g04381 1241 ProSitePatterns AAA-protein family signature. 1080 1099 IPR003960 GO:0005524|GO:0016887
Trre2g04381 1241 SMART AAA_5 973 1110 IPR003593 GO:0016887
Trre2g04381 1241 MobiDBLite consensus disorder prediction 311 335 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre2g04381 Trre-Chr2 51293621 51306222 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre2g04381 936 1168 Calmodulin-binding Proteins AT3G56690 41.350 4.99e-42 166
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre2g04381 - - gmx:100801477 1714.89