Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre2g04374 ATGAAGTTCTGCAAGACGTATCAGAAGTATATGCGAGATCATCAGGAGCAGAACAAGCTCCCTGTCGTTGGATTCAAGAACCTCAAAAAGATCATCAAAAAATGTAGACGATCTTCTCAATTGCACAAAACCTGCCCCGATCAATGTCCAGTGTGTGATGGGACCTTTTTCCCTTCTCTTCTCAATGAAATGTCAGAAATAGTGGGATGTTTTAATCAGCGTGCACAGAAATTACTGGAAAAACATCTTGCTTCTGGATTCAGAAAGTACATTCTCATGCTGAAAGGAAAATCAAAAGGGAATCATACTACTTTAATTCATGAAGGAAAAGAATTAGTTACCTATGCACTGATAAACGCTCTTGCAATTCGCAAAATACTAAAGAAATATGATAAGATTCATTATTCCAAGCAAGGGCAATTATTCAAGTCACAAGCCCAGACTATGCACAAGGAAATTCTTCAGAGTCCTTGGCTTATTGAGCTTATGGCATTCCATATCAACTTAAGGGAAACTAATGTCAACTCAGGGAAGGCACCTGCATTATTCGAAGGATGTGATATCGCAACTAAGGATAGAAAAACCTCACTTGCTTGTGAGCTCTCTGATGACATCAATTATAAGTTCGTTGGTTCTATCAAAATAGACATCGACTTGACATGCTCTATATGCTTGGACACGGTGTTTGATCCAGTTTCTCTAACTTGTGGCCACATATTCTGCTACAGTTGTGCTTGCTCAGCTGCCTCTGTTAGTATTGTTGATGGACTTAAGGCAGCACATTCGAAAGAGAAATGTCCTCTATGCCGAGAGGCAAGGGTTTACGAAGGTGCTGTGCATATGGAAGAATTAAATATTCTGTTAGGACGAAGATGCAAGGATTATTGGGAGGAAAGGCTTCAGATGGAAAGGGTGGAGAGGGTCAAGCAAGCAAAAGAGCACTGGGAAACACAGTGTAGTGCGTTCATGGGCATCTAA 978 0.4059 MKFCKTYQKYMRDHQEQNKLPVVGFKNLKKIIKKCRRSSQLHKTCPDQCPVCDGTFFPSLLNEMSEIVGCFNQRAQKLLEKHLASGFRKYILMLKGKSKGNHTTLIHEGKELVTYALINALAIRKILKKYDKIHYSKQGQLFKSQAQTMHKEILQSPWLIELMAFHINLRETNVNSGKAPALFEGCDIATKDRKTSLACELSDDINYKFVGSIKIDIDLTCSICLDTVFDPVSLTCGHIFCYSCACSAASVSIVDGLKAAHSKEKCPLCREARVYEGAVHMEELNILLGRRCKDYWEERLQMERVERVKQAKEHWETQCSAFMGI 325
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre2g04374 325 PANTHER E3 UBIQUITIN-PROTEIN LIGASE BAH1 1 325 IPR033326 -
Trre2g04374 325 SUPERFAMILY RING/U-box 214 273 - -
Trre2g04374 325 SMART ring_2 221 269 IPR001841 -
Trre2g04374 325 CDD SPX_BAH1-like 2 140 - -
Trre2g04374 325 CDD RING-HC_BAH1-like 212 284 - -
Trre2g04374 325 Pfam Zinc finger, C3HC4 type (RING finger) 218 271 - -
Trre2g04374 325 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 201 323 IPR013083 -
Trre2g04374 325 ProSiteProfiles SPX domain profile. 1 144 IPR004331 -
Trre2g04374 325 ProSitePatterns Zinc finger RING-type signature. 236 245 IPR017907 -
Trre2g04374 325 ProSiteProfiles Zinc finger RING-type profile. 221 270 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre2g04374 Trre-Chr2 51217751 51221143 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre2g04374 218 270 C3H Transcription Factor Family AT4G28270 41.379 1.78e-07 48.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre2g04374 K16275 - gmx:100803060 498.819