Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre2g04330 ATGGATAGTTTCATAAACCCAGCAGGTTGGCATGAATGGGATGGTAATTTTGCATTGAGCACTTTGTACTATGCAGAATACAATAATCGAGGAGCAGGATCAAACATTGTGAATCGTGTTACCTGGCCTGGTTATCATATTATTGGTGCTATTGATGCAGCCAATTTCACAGTGTCTAACTTCTTGAGTGGTGATAGTTGGATTCCTCAAACTGGTGTTCCATACTTGAGTGGATTGACATAG 243 0.4033 MDSFINPAGWHEWDGNFALSTLYYAEYNNRGAGSNIVNRVTWPGYHIIGAIDAANFTVSNFLSGDSWIPQTGVPYLSGLT 80
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre2g04330 80 Gene3D - 1 80 IPR012334 -
Trre2g04330 80 PANTHER PECTINESTERASE 1 69 - -
Trre2g04330 80 Pfam Pectinesterase 1 65 IPR000070 GO:0030599|GO:0042545
Trre2g04330 80 SUPERFAMILY Pectin lyase-like 1 78 IPR011050 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre2g04330 Trre-Chr2 50813301 50813543 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre2g04330 1 79 Carbohydrate Esterase AT2G47550 67.089 1.14e-34 121
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre2g04330 K01051 - gmx:100786124 149.443