Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre2g04329 ATGGCTTTCAATAACAAAACCATTCTACTTTCCATCTTGTTCTTTCTAATATCATTGTGTGTAGCAAATGGTGTTCCACCTGAAACCATTTGCGGATCAACTGTAGACCCTACTTATTGTAAAAATGTACTTGTCAATCAAAATGGCAACATTTATGATTATGGTCGCTTTTCTACTAGAAAATCTTTATCCCAATCTCGGAAGTTCATGAATTCAATGGACTCATATCTTCAAGGTAGCTCGTCTTTGTCTCAATCGACAATTCGTGCCCTTGAAGATTGTCAATTCCTTGCTGACCTAAGTTTTGAATACTTATCAAATACTTATGCCATGACAAATCAATCTAATAACGTTCTTCCAATTTCTCAAGCCGGAGATTTTGAAACTTTACTCAGTGCCGTTTTGACCAACCAACAAACATGTTTGGATGGTCTGAACAATGTAGCTTATGATCAAAGAGTGAAAAGTGACTTGTCGTCATCACTCTCGGATGACATAAAGCTTCATAGTGTCACTCTAGCCTTGTACAAGAAAGGTTGGATGCCTCAAAATAAAATAAGAACATCATGGCCACAAAACGGAAGACATTTGAATTTTAAAAATGGTCGTTTACCAATGAAAATGTCAAATAAAGCACGTGCTATTTATGATTCTTCTAGACACAATGGAAGAAAACTACTTCAAACGGTCGCTAATGAAGATAGTGTTGTTGTGAGTGATATTGTTGTTGTTAGTCAAGATGGAAGTGGAAATTTTACCACTATCAACGATGCAATAGCTGCCGCACCGAATAACACAGTTGCTAGAGATGGATACTTCTTTATTTTTATCACTAAAGGTGTGTATCAAGAGTATGTATCTATACCAAAAAACAAGAAGTACTTGATGATGGTTGGAGAAGGAATCAATCAAACAATTATCACAGGCGACCAAAATGTTGTTGATGGGTTCACTACATTCAATTCTGCCACATTTGCTGTGGTTGCTCAAGGGTTCGTGGCAGTTAACATAACATTTCGCAACACCGCTGGACCAGAAAAACATCAAGCAGTTGCAATGAGAAGTGGAGCAGATATGTCCACATTTTATAGTTGCAGTTTTGAAGGGTATCAAGACACATTGTATACACATTCTCTAAGGCAGTTTTATAGAGAATGTGATATTGATGGAACTGTTGACTTCATATTTGGAAATGCTGCAGTTGTTTTACAAAATTGTAACATTTATCCTCGCCTTCCACTTAGTGGACAATTCAATTCCATCACAGCGCAAGGACGAACTGATCCAAATCAAAACACTGGAATTTCTATACAAAATGCAACTATTAAAGCAGCCGATGATTTGGCTCCCAAAGTTGGAAATGTTCAAACATACCTAGGAAGACCATGGAAAGAATATTCAAGGACAGTTTTTATGCAATCCTCCATGGATAGTTTCATAAATCCAACTGGTTGGCATGAATGGAATGGTGATTTTGCATTGAGCACTTTGTACTATGCAGAATACAATAATAGAGGAGCAGGATCAAACACTGGAAATCGAGTTACATGGCCTGGTTATCATGTTATTGGTGCTACTGATGCAGCCAATTTCACAGTGTCCAATTTTTGA 1611 0.3718 MAFNNKTILLSILFFLISLCVANGVPPETICGSTVDPTYCKNVLVNQNGNIYDYGRFSTRKSLSQSRKFMNSMDSYLQGSSSLSQSTIRALEDCQFLADLSFEYLSNTYAMTNQSNNVLPISQAGDFETLLSAVLTNQQTCLDGLNNVAYDQRVKSDLSSSLSDDIKLHSVTLALYKKGWMPQNKIRTSWPQNGRHLNFKNGRLPMKMSNKARAIYDSSRHNGRKLLQTVANEDSVVVSDIVVVSQDGSGNFTTINDAIAAAPNNTVARDGYFFIFITKGVYQEYVSIPKNKKYLMMVGEGINQTIITGDQNVVDGFTTFNSATFAVVAQGFVAVNITFRNTAGPEKHQAVAMRSGADMSTFYSCSFEGYQDTLYTHSLRQFYRECDIDGTVDFIFGNAAVVLQNCNIYPRLPLSGQFNSITAQGRTDPNQNTGISIQNATIKAADDLAPKVGNVQTYLGRPWKEYSRTVFMQSSMDSFINPTGWHEWNGDFALSTLYYAEYNNRGAGSNTGNRVTWPGYHVIGATDAANFTVSNF 536
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre2g04329 536 Pfam Plant invertase/pectin methylesterase inhibitor 28 174 IPR006501 GO:0004857
Trre2g04329 536 FunFam Pectinesterase 28 178 - -
Trre2g04329 536 SMART PMEI_2 22 175 IPR006501 GO:0004857
Trre2g04329 536 Pfam Pectinesterase 242 536 IPR000070 GO:0030599|GO:0042545
Trre2g04329 536 Gene3D - 236 536 IPR012334 -
Trre2g04329 536 CDD PMEI-like_3 29 180 - -
Trre2g04329 536 Gene3D Invertase/pectin methylesterase inhibitor family protein 28 178 IPR035513 -
Trre2g04329 536 PANTHER PECTINESTERASE 17 536 - -
Trre2g04329 536 FunFam Pectinesterase 235 536 - -
Trre2g04329 536 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 29 178 IPR035513 -
Trre2g04329 536 ProSitePatterns Pectinesterase signature 2. 388 397 IPR033131 -
Trre2g04329 536 SUPERFAMILY Pectin lyase-like 237 536 IPR011050 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre2g04329 Trre-Chr2 50801610 50803350 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre2g04329 8 534 Carbohydrate Esterase AT1G02810 59.494 0.0 659
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre2g04329 K01051 - gmx:100813051 812.757