Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre2g04316 ATGTGTGGCGGTGCTATCATCGCTGACTTCATTCCTCGCCGTGGCGGTCGCCGTCTAACCGCCGCTGAACTCTGGCCTAACTCATTCGGTCAACAAATTGACTCCACCTCCTCAGACTTTGATTTTGATCAACAACAACCACCACCCATTACTCTCAAAAGATCATTGCCTCTCAAAGTTAACGATCGACTTGAAAAGCCTGTGAAAAAACAGAGGAAGAATCTCTATAGAGGGATTCGACAACGTCCATGGGGAAAATGGGCTGCAGAAATTCGTGATCCTAGAAAAGGTGTTCGTGTTTGGCTTGGTACATTCAACACTGCTGAAGAAGCTGCTAGAGCTTATGACAAAGAAGCTCGAAAAATCCGCGGCAAAAAAGCTAAGGTTAATTTTCCTAATGAAGAAGATGAATATTCCATTCAAGGTACTCGTCGTCACAATAATCATCCTCCACAACCACCACCACCACCACCGATTCATGGTCTTTATCAACAATATCAGAAAAATCTGAACTTGGAATTTGGTTATGATCTGAACCAAGCTGACACAATTCAGAATGAACCTTTTATTATATCTGGTGGTTCTAATGGTGATGAGAATTCTGTATATGGGTCTGGTTCATGTTCAGAAGTTGGTTATTCTGTAATAGAGTTCAACGATGGTTCGAACCCGAACCCGAACGAAACCGGTTATTTTGGTGGTGTTGTGAATGAACATGAAAAAGAGAAAGAGAAAGTACAAGGAACACATGTTGTTGAAGCTGATGAAGCTGCTAAGAATGAAGTTCAAGAGTTATCTGATGAATTAATGGCTTATGAAGATTACATGAAGTTTTATCAGATTCCATATTATGATGGACAATCTATGCCACCAAATATTGTTCAGGAACATGTTGTTGGTGATTTATGGAGCTTTGATTGA 921 0.4072 MCGGAIIADFIPRRGGRRLTAAELWPNSFGQQIDSTSSDFDFDQQQPPPITLKRSLPLKVNDRLEKPVKKQRKNLYRGIRQRPWGKWAAEIRDPRKGVRVWLGTFNTAEEAARAYDKEARKIRGKKAKVNFPNEEDEYSIQGTRRHNNHPPQPPPPPPIHGLYQQYQKNLNLEFGYDLNQADTIQNEPFIISGGSNGDENSVYGSGSCSEVGYSVIEFNDGSNPNPNETGYFGGVVNEHEKEKEKVQGTHVVEADEAAKNEVQELSDELMAYEDYMKFYQIPYYDGQSMPPNIVQEHVVGDLWSFD 306
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre2g04316 306 PRINTS Ethylene responsive element binding protein signature 98 114 IPR001471 GO:0003700|GO:0006355
Trre2g04316 306 PRINTS Ethylene responsive element binding protein signature 76 87 IPR001471 GO:0003700|GO:0006355
Trre2g04316 306 ProSiteProfiles AP2/ERF domain profile. 75 132 IPR001471 GO:0003700|GO:0006355
Trre2g04316 306 Gene3D AP2/ERF domain 75 133 IPR036955 GO:0003700|GO:0006355
Trre2g04316 306 Pfam AP2 domain 76 124 IPR001471 GO:0003700|GO:0006355
Trre2g04316 306 SUPERFAMILY DNA-binding domain 75 133 IPR016177 GO:0003677
Trre2g04316 306 Coils Coil 255 275 - -
Trre2g04316 306 SMART rav1_2 75 138 IPR001471 GO:0003700|GO:0006355
Trre2g04316 306 CDD AP2 76 133 IPR001471 GO:0003700|GO:0006355
Trre2g04316 306 PANTHER DNA-BINDING DOMAIN 62 238 IPR044808 GO:0003700|GO:0009873
Trre2g04316 306 MobiDBLite consensus disorder prediction 134 157 - -
Trre2g04316 306 FunFam Ethylene-responsive transcription factor 2 74 134 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre2g04316 Trre-Chr2 50687566 50688579 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre2g04316 1 133 AP2-EREBP Transcription Factor Family AT3G16770 52.482 3.00e-42 144
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Trre2g04316 AP2 1.5e-12 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre2g04316 K09286 - gmx:100780763 336.265