Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Trre2g04314 ATGGTGTCACTGAAACTTCAGAAGCGGCTCGCCGCTAGTGTTCTCAAGTGCGGTAGAGGAAAGGTCTGGCTTGACCCTAATGAGTGCAATGAAATCTCCATGGCTAATTCACGCCAAAACATCCGGAAGTTGGTTAAGGATGGTTTCATTATCAGGAAGCCAACTAAGATCCACTCCCGCTCTCGTGCTAGGCGTATGAAGGAGGCCAAGAGGAAGGGACGTCATTCTGGATACGGTAAGAGAAAGGGTACAAGAGAGGCTAGGCTCCCCACCAAAATCCTTTGGATGAGGAGGATGCGTGTCCTCAGGCGTTTGCTTCGCAAGTACCGAGAGTCAAAGAAAATTGACAAACACATGTACCATGATATGTACATGAAGGTCAAAGGTAACGTCTTCAAGAACAAGAGAGTCCTTATGGAGAGCATTCACAAGTCCAAGGCTGAGAAGGCGAGAGAGAAGACACTATCTGACCAGTTTGAGGCCAAGAGGGCAAAGAATAAGGCCAGCAGAGAAAGGAAATTCGCTCGCAGAGAAGAGCGCTTTGCTCAAGGTCCCGGAGAGAAGGCACCTGCAGCACCAGTTGCACCAGCTACAGCAGCAACCCAGCCCGCTCAACCATCAAAGAAATCCAAGAAGTAA 639 0.493 MVSLKLQKRLAASVLKCGRGKVWLDPNECNEISMANSRQNIRKLVKDGFIIRKPTKIHSRSRARRMKEAKRKGRHSGYGKRKGTREARLPTKILWMRRMRVLRRLLRKYRESKKIDKHMYHDMYMKVKGNVFKNKRVLMESIHKSKAEKAREKTLSDQFEAKRAKNKASRERKFARREERFAQGPGEKAPAAPVAPATAATQPAQPSKKSKK 212
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Trre2g04314 212 FunFam Ribosomal protein L19 1 56 - -
Trre2g04314 212 SMART Ribosomal_L19e_2 3 146 IPR000196 GO:0003735|GO:0005840|GO:0006412
Trre2g04314 212 Coils Coil 210 212 - -
Trre2g04314 212 MobiDBLite consensus disorder prediction 149 212 - -
Trre2g04314 212 MobiDBLite consensus disorder prediction 57 85 - -
Trre2g04314 212 CDD Ribosomal_L19e_E 4 167 IPR033935 GO:0003735|GO:0022625
Trre2g04314 212 ProSitePatterns Ribosomal protein L19e signature. 7 26 IPR023638 -
Trre2g04314 212 FunFam Ribosomal protein L19 57 191 - -
Trre2g04314 212 SUPERFAMILY Ribosomal protein L19 (L19e) 3 144 IPR035970 GO:0003735|GO:0005840|GO:0006412
Trre2g04314 212 PANTHER 60S RIBOSOMAL PROTEIN L19 1 188 IPR039547 GO:0003723|GO:0003735|GO:0022625
Trre2g04314 212 Gene3D - 2 56 IPR015972 GO:0003735|GO:0005840|GO:0006412
Trre2g04314 212 Hamap 50S ribosomal protein L19e [rpl19e]. 3 149 IPR000196 GO:0003735|GO:0005840|GO:0006412
Trre2g04314 212 MobiDBLite consensus disorder prediction 149 184 - -
Trre2g04314 212 Gene3D - 57 188 - -
Trre2g04314 212 MobiDBLite consensus disorder prediction 57 79 - -
Trre2g04314 212 Pfam Ribosomal protein L19e 4 145 IPR000196 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information


Select Gene Chromosome Start End Duplicated_type
Trre2g04314 Trre-Chr2 50665788 50667430 Dispersed/Wgd
       

Functional genes information


Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre2g04314 1 212 Cytoplasmic Ribosomal Protein Gene Family AT3G16780 84.906 2.26e-128 358
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre2g04314 K02885 - rvl:131315051 368.622