Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre2g04310 ATGGCGGCATTGTCTTTTTCAGTTGCATCTGTTGTTGAGGATGTTCTTCAACAACATGGTACTCGTCTCAAAGATCTTGATTTGGAATCTAGAAAATCAGAAGAAGCTGCATTCAGAAGATATGAAGCAGCAGGGTGGTTGAGGAAAATGGTTGGAGTTGTTGCAGCTAAAGATTTACCAGCAGAACCTTCTGAGGAAGAGTTTAGGCTTGGTTTGAGAAGTGGGATCATTCTTTGTAATGTTCTTAACAAGGTTCAACCTGGTGCTGTATCCAAGGTTGTGGAGAGTCCTGTTGATTCTGGACTAATCCCCGATGGAGCGCCTTTATCGGCTTTTCAGTATTTTGAAAATGTTAGGAACTTTCTGGTGGCTGTTCAGGAAATTGGAATTCCTACCTTTGAATCATCTGATCTGGAACAAGGAGGAAAATCGTCAAGGATTGTGAACAGTGTCTTGGCCCTTAAATCCTATAGTGAATGGAAACAAACTGGTGCTAATGGTGTGTGGAAATTTAGTGGAACTATCAAACCTGCAATCACTACAAAATCTTTTGTGAGAAAAAACTCGGAGCCATTTACCAATTCCTTGTCAAGAACCTCTTCGATCAACGAAAAAAATGAAAAATCTATGACTGCTTTTGCCTCTGATGTTGTTGAGTCTAATAAAATGTCTAGTTCTCATTCTTTAGGTATGCTTGTTCGCGCAATACTATTCGATAAGAAGCCGGAAGAAGTCCCAACGTTGGTTGAATCTGTTTTGACTAAAGTCGTGGAGGAGTTCGAGCATCGCATTGCAAGCCAGGATGAACAGACAAAAACAACTTCAAGAGGTGCAGTGTCTCAAAGCGATGGAGCTGTAGCAAAGTTTACTATGGCACGTAAAAAGGTGGATAACAAGATTTCTACAGTAACAAAGAAAGAAGAATTCATCCATAAAAACCATGTTGCGGATGAGGAATCAAAGAGACAACTTATGAAGCAGCAAATGCTCTTTGATCAGCGGCAGAAAGATATTCAAGAGTTAAAGCATACAGTTCAAACCACCAAAGTTGGTATGCAGTTCATGCAAATGAAATTTCATGAGGAGTTCTCCAATTTAGGCATGCATATTCATGGTTTAGCTCATGCTGCTTCTGGATATCATAGAGTTCTCGAAGAAAATCGCAAACTATACAATGAAGTCCAGGATCTTAAGGGGAGTATTAGGGTGTACTGTCGAGTAAGACCTTTCTTATCCGGACAACCAAATCATTTGAGTACTGTGGAGAACATAGAAGATGGAGTTATCACAATTAGTGTTCCGTCAAAGAATGGGAAAGGGTGCAGATCCTTCAACTTCAACAAAGTCTTTGGACCATCCGCAGCTCAAGGGGAAGTCTTCGCTGATATGCAGCCACTCGTTAGGTCTGTTCTTGATGGTTTTAATGTTTGCATATTTGCTTATGGCCAAACAGGATCAGGAAAAACTTTCACCATGACTGGACCAAAAGAGATCACAGAAAAAAGCCAAGGTGTAAATTACAGGGCTCTAAGTGATTTGTTTTATACAGCAAATCAAAGAAAGGACACTTTTCGCTACGATGTGTCTGTTCAGATGATTGAAATTTATAATGAGCAAGTCAGAGATCTGTTAGTTACGGATGGAACAACCAAAAGGTTAGAAATTCGTACCAACTCTCAAAGAGGGCTCAGTGTACCAGATGCAAGCCTTGTCCAAGTATCATCAACAAATGATGTTATTGAACTAATGAACTTGGGCCATAAGAACCGTGCAGTCGGAGCAACAGCCCTTAATGACCGTAGTAGCCGATCTCACAGTTGCTTGACTGTTCATGTTCAAGGAAGAGACTTGACATCTGGAGCTGTCCTACGGGGATGCATGCATCTTGTTGACTTGGCAGGGAGTGAGAGGGTCGACAAATCTGAGGCGACAGGTGATAGACTGAAAGAGGCACAGCATATTAACAAATCTCTTTCAGCTTTGGGTGATGTCATAGCTTCTCTTGCTCAGAAAAACCAACATGTCCCTTATAGAAATAGCAAACTCACGCAATTACTCCAAGATTCACTTGGAGGACAGGCGAAGACACTAATGTTTGTTCACATTAGTCCAGAGGCTAATGCTATTGGAGAAACAATTAGCACTCTAAAATTTGCAGAAAGAGTTGCGACAGTTGAACTTGGTGCTGCTCGAGTAAACAAGGACGGAGCAGATGTCAAAGAGCTCAAAGATCAGATTGCTAGCCTTAAGGCAGCATTGGCAAGAAAGGAAGGAAATTCAGAACATTCTCTATCTGGAAGCTCTGGAAAGTATAGGACAACGGCTAGTGAACTATCACCCTATCATGCAAGCCAGCGGGCTGCGGATATCGTGGATGGTCCCTTTGGGTTCCGGCAACCAATGATTGATGTCGGCAACTTAGAGAGCAATACTACATTGAGGCAAAAAACTCAGAGCTTTGATTTTGATGAGATATTAACAAATTCACCACCGTGGCCGCCAGTGAATGGTCTTGTTCAAAACTGCGTGGAAGATGATGATGATGATAAAGAAACCGGTACAGGAGAGTGGGTTGATAAGGTCATGGTAAACAAGCTAGATGTGAACAAAACCGGTAACATGTTAGGGTGTTGGGAAACAGATAATGGGAATTTATCCGAGGAATTTTATCAGAAATATCTCCAAGGTTCTTCCCAAGTATACTCGGAACGATCTTACAATATGTTCATGAGAGGCAACCAGTTTAACATCGCTGGTTCAGATGACACCGATGATGTTGATGCTGCAACCAGTGATTCCTCGGAGCATGACTTGCTTTGGCAATTTAATCATTCCAAAGTTACGAGCATAGCCAATGGAAATCAATCAAAGGGTAGGAAATTTATCTCAAAGTCGGCAAAAAGCCCTGCAGCATTGAGCAAGAATAGTATTCATTCGTCTACTGCTCCTTCACCTTCACGGAAACAAACGAATGGTGTCTCACATCGAACACCAACAAGACAACCAGTTCCTGTTGACATGAAACGGAAAACTGGGACTAGAAAGTGA 3048 0.417 MAALSFSVASVVEDVLQQHGTRLKDLDLESRKSEEAAFRRYEAAGWLRKMVGVVAAKDLPAEPSEEEFRLGLRSGIILCNVLNKVQPGAVSKVVESPVDSGLIPDGAPLSAFQYFENVRNFLVAVQEIGIPTFESSDLEQGGKSSRIVNSVLALKSYSEWKQTGANGVWKFSGTIKPAITTKSFVRKNSEPFTNSLSRTSSINEKNEKSMTAFASDVVESNKMSSSHSLGMLVRAILFDKKPEEVPTLVESVLTKVVEEFEHRIASQDEQTKTTSRGAVSQSDGAVAKFTMARKKVDNKISTVTKKEEFIHKNHVADEESKRQLMKQQMLFDQRQKDIQELKHTVQTTKVGMQFMQMKFHEEFSNLGMHIHGLAHAASGYHRVLEENRKLYNEVQDLKGSIRVYCRVRPFLSGQPNHLSTVENIEDGVITISVPSKNGKGCRSFNFNKVFGPSAAQGEVFADMQPLVRSVLDGFNVCIFAYGQTGSGKTFTMTGPKEITEKSQGVNYRALSDLFYTANQRKDTFRYDVSVQMIEIYNEQVRDLLVTDGTTKRLEIRTNSQRGLSVPDASLVQVSSTNDVIELMNLGHKNRAVGATALNDRSSRSHSCLTVHVQGRDLTSGAVLRGCMHLVDLAGSERVDKSEATGDRLKEAQHINKSLSALGDVIASLAQKNQHVPYRNSKLTQLLQDSLGGQAKTLMFVHISPEANAIGETISTLKFAERVATVELGAARVNKDGADVKELKDQIASLKAALARKEGNSEHSLSGSSGKYRTTASELSPYHASQRAADIVDGPFGFRQPMIDVGNLESNTTLRQKTQSFDFDEILTNSPPWPPVNGLVQNCVEDDDDDKETGTGEWVDKVMVNKLDVNKTGNMLGCWETDNGNLSEEFYQKYLQGSSQVYSERSYNMFMRGNQFNIAGSDDTDDVDAATSDSSEHDLLWQFNHSKVTSIANGNQSKGRKFISKSAKSPAALSKNSIHSSTAPSPSRKQTNGVSHRTPTRQPVPVDMKRKTGTRK 1015
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre2g04310 1015 FunFam Kinesin-like protein KIN-14I isoform A 24 176 - -
Trre2g04310 1015 PRINTS Kinesin heavy chain signature 626 644 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Trre2g04310 1015 PRINTS Kinesin heavy chain signature 675 696 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Trre2g04310 1015 PRINTS Kinesin heavy chain signature 595 612 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Trre2g04310 1015 PRINTS Kinesin heavy chain signature 473 494 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Trre2g04310 1015 Gene3D Kinesin motor domain 395 766 IPR036961 -
Trre2g04310 1015 MobiDBLite consensus disorder prediction 951 998 - -
Trre2g04310 1015 Gene3D - 24 185 IPR036872 -
Trre2g04310 1015 PANTHER KINESIN-LIKE PROTEIN KLP-3 44 967 IPR027640 GO:0003777|GO:0007018
Trre2g04310 1015 Pfam Calponin homology (CH) domain 40 159 IPR001715 GO:0005515
Trre2g04310 1015 MobiDBLite consensus disorder prediction 951 1015 - -
Trre2g04310 1015 SUPERFAMILY Calponin-homology domain, CH-domain 40 170 IPR036872 -
Trre2g04310 1015 FunFam Kinesin-like protein KIN-14I isoform A 395 767 - -
Trre2g04310 1015 SMART kinesin_4 398 733 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Trre2g04310 1015 Pfam Kinesin motor domain 406 724 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Trre2g04310 1015 ProSiteProfiles Calponin homology (CH) domain profile. 37 159 IPR001715 GO:0005515
Trre2g04310 1015 Coils Coil 739 759 - -
Trre2g04310 1015 SMART ch_5 39 157 IPR001715 GO:0005515
Trre2g04310 1015 CDD CH_AtKIN14-like 39 156 - -
Trre2g04310 1015 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 400 757 IPR027417 -
Trre2g04310 1015 CDD KISc_C_terminal 398 727 - -
Trre2g04310 1015 ProSiteProfiles Kinesin motor domain profile. 400 725 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre2g04310 Trre-Chr2 50626258 50632009 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre2g04310 388 725 Calmodulin-binding Proteins AT5G65930 42.442 3.65e-77 275
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre2g04310 K10406 - gmx:100801279 1643.25