Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre2g04299 ATGGCCACCGCAAGGACAGTCAAGGATGTTTCTCCACATGAGTTCGTTAAGGCTTACTCTGCTCATCTCAAAAGATCTGGAAAGATGGAGCTTCCAGAATGGACAGATATTGTGAAGACTGCAAAGTTTAAGGAGTTGGCTCCTTATGATCCTGATTGGTATTATATCAGAGCTGCTTCCATGGCAAGGAAGATTTACATGAGGGGAGGACTTGGTGTTGGTGCTTTCCAGAGGATTTACGGTGGAAGCTAG 252 0.4524 MATARTVKDVSPHEFVKAYSAHLKRSGKMELPEWTDIVKTAKFKELAPYDPDWYYIRAASMARKIYMRGGLGVGAFQRIYGGS 83
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre2g04299 83 Gene3D - 1 83 IPR036388 -
Trre2g04299 83 SMART Ribosomal_S19e_2 6 83 IPR001266 GO:0003735|GO:0005840|GO:0006412
Trre2g04299 83 Pfam Ribosomal protein S19e 6 82 IPR001266 GO:0003735|GO:0005840|GO:0006412
Trre2g04299 83 SUPERFAMILY "Winged helix" DNA-binding domain 6 82 IPR036390 -
Trre2g04299 83 PANTHER 40S RIBOSOMAL PROTEIN S19 2 82 IPR001266 GO:0003735|GO:0005840|GO:0006412
Trre2g04299 83 FunFam 40S ribosomal protein S19 2 83 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre2g04299 Trre-Chr2 50535239 50536134 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre2g04299 1 83 Cytoplasmic Ribosomal Protein Gene Family AT5G61170 87.952 1.24e-52 159
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre2g04299 K02966 - gmx:100499800 169.859