Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre2g04287 ATGGGAAGAGCTCCATGTTGTGAGAAAGTAGGGTTGAAAAGGGGAAGATGGGCAACTGAAGAAGATGAGATCTTGACAAAATATATTCAAGCCAATGGAGAAGGTTCTTGGAGGTCATTGCCCAAAAATGCAGGATTATTAAGATGCGGAAAGAGTTGTAGGCTAAGATGGATTAACTATTTGAGAACCGACCTCAAAAGAGGGAACATTTCTAAGGAAGAGGAAGATACAATTGTAAAGCTGCACACTTCATATGGCAACAGGTGGTCCATGATAGCTAGCCACTTGCCAGGAAGAACCGACAATGAAATTAAAAATCATTGGAATTCTCACCTAAGCAGAAAAATTTACAGTTTCTCCAAAATATCCAACACTACAGAGCCAAAAATCATTGATATTCCACCTCCTAAGCGCAAATGTGGCAGAACAAGTCGTTGGGCAATGAAGAAAAACAAAAGCTACACAAAACAAACCGTCACTAAAAATACTAAAGAAACTGTCACTATTGAACCTGAAGTTCAAATTCCACGCACCCCATCACTAGAAAGTGAGGTTGATGTGGTAAAAACAACACATGAAGAAGAGAAAGAAGAAACTTATGATTATGAATCATGTGACGACATCATAGTACTGAGTGAATTATTAGATAGCATTAATGAAGAAAGTGGGGCGTTGGGTAAGGAAAATTGTTTGGTGGAAACATGTGGTACTGTTTCAAATTTAAGTGAAGAGAGAGAAATGGTGGGTGTTATGGTTATGGGTGAAGAAAATGAAAGAACAACGAATGATGATGGTGATGTTTATCTTAATCATAAATTGGATTCATGTGAGAACACTGAGAGTAGTGTGAATAATTACCAAAGCTCAAACAATGGGGAAAGTGATGAATGGTCCTCAATAGGTTTAAATTTTGATCATGATGATAAATGGAATTGGGAAAGTGTTATGGAGTTTAATATTGTTGATAATGATGATCATAATAGTCATAGGGAGCATAAAGAAAAGATTTTAAATTGGTTGTATGAAGATGATGATTTTGAAGGTGATAGTAACATGTTGGGAGAGATTGATCCTCAGAAACAAAATGATTTAATTGCTTGGTTTCTCTCTTGA 1113 0.3639 MGRAPCCEKVGLKRGRWATEEDEILTKYIQANGEGSWRSLPKNAGLLRCGKSCRLRWINYLRTDLKRGNISKEEEDTIVKLHTSYGNRWSMIASHLPGRTDNEIKNHWNSHLSRKIYSFSKISNTTEPKIIDIPPPKRKCGRTSRWAMKKNKSYTKQTVTKNTKETVTIEPEVQIPRTPSLESEVDVVKTTHEEEKEETYDYESCDDIIVLSELLDSINEESGALGKENCLVETCGTVSNLSEEREMVGVMVMGEENERTTNDDGDVYLNHKLDSCENTESSVNNYQSSNNGESDEWSSIGLNFDHDDKWNWESVMEFNIVDNDDHNSHREHKEKILNWLYEDDDFEGDSNMLGEIDPQKQNDLIAWFLS 370
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre2g04287 370 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Trre2g04287 370 PANTHER TRANSCRIPTION FACTOR MYB8-RELATED-RELATED 1 241 - -
Trre2g04287 370 CDD SANT 16 61 IPR001005 -
Trre2g04287 370 Gene3D - 11 67 - -
Trre2g04287 370 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Trre2g04287 370 Gene3D - 71 116 - -
Trre2g04287 370 CDD SANT 71 112 IPR001005 -
Trre2g04287 370 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Trre2g04287 370 FunFam Myb transcription factor 11 67 - -
Trre2g04287 370 SMART sant 66 114 IPR001005 -
Trre2g04287 370 SMART sant 13 63 IPR001005 -
Trre2g04287 370 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Trre2g04287 370 Pfam Myb-like DNA-binding domain 67 112 IPR001005 -
Trre2g04287 370 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Trre2g04287 370 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre2g04287 Trre-Chr2 50451653 50456664 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre2g04287 1 370 MYB Transcription Factor Family AT2G47460 41.000 4.59e-77 240
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Trre2g04287 Myb_DNA-binding 5.9e-11 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre2g04287 K09422 - gmx:100814275 330.102