Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre2g04279 ATGCTTGAAACCACTCACTCATCGCGAATCTTTCGCGGTGTTCATTTTGCTCTCTATGGTTTCGATCCTCACACAGAATCTCAGATACGATTCAAGCTTGTTAATGGCGGTGGAATTGATGTGGGGAAAAACAGTGGTAGTTGCACGCATGTCATTGTTGATAAGATTGCTTATGATAATCCTGTGTGTATTGCTGCTAGAAATGATGGAAAAACGTTGGTCACTGCATTGTGGGTTGAACACAGTGCTGATATTGGAATGCCTGTTGATGCTAACTCGGTTATGTACAGACCGCTGAAAGATTTGGATGGCATTCCAGGTGCAAAAGATTTGATTGTCTGCTTGACTGGCTATCTACGCCAGGATCGGGAAGACATTATGACAATGGTTGGCCTGATGGGTGCACAATTTTCTAAACCGTTGGTGGCAAACAAGGTTACCCATCTTATATGCTACAAATTTGAAGGGGAGAAGTACGAGCTTGCCAAGAAAATGGCCACAATAAAGCTAGTTAATCATCGTTGGCTGGAAGATTGCTTGAAGAATTGGGTGCTTCTTCCTGAAGACAAATATAACAAGAGTGGTTTTGAACTGGAGATGATGGTGGAAGAGGCTAAGGATTCTGAGGATGAGGCTGAAGATTCTAAGCTGGGGCAATCAGGGGGAAGGAATAGAAGCAGAAGTCCCCTTGGTTCAAAATTTGGTACAGCTGTAACTCATGGATTGTCAAAATCTTTAAGAGAGGAGGCATCAAATGCCATCCCAGATTCTACTGGTCCTCAGGTTTTGCCAAACGCCGGTAAGGGTAAAGACTCTTCAACTACTACAGGAAATAGGACCAATTCTGATCAAGACGTAGACTTGCATAATATTGGCAACCTGAAGGTAAGCTGTCAGGTTCCTGATGTTTCTTGGCACTCTACATCATGTCAGCTACCTGAATCATATGTTAAGACCGTTGAGTCTAAGAATGCTGATGTTCCAAAGTCATCTGGTTCCCAGGATCTTGGCATTACCGGAAATACAAATGCATCTGGTCAGCGACCTAATCTGCGTGATGACACTTCGGAGACGAAGAAGTTAAGTTACACAAGATCAACTTCTGCAAGTGCTGATGCACTTGCACATTCAGATGAAAAGCTCGGTGCTACAAGTTATTCTAGGAAGAACCAAAAAGGGTTTAACTTTTCAAGGGAAATTGACGAATGTGACGGCAACAACCTTGAAACCCCTTCCACCAAGGTAGAAAAGGCAAGTGAAGGAATCAAATCTGCCTGTGTTGAAGGTTCTGGGAAAGAAACTGGTGTTATTCAAGAGGATTATGGAAATAATTTATTGCCTCAAAAGAGGACGAATGGAGCCGCTTCAACCAAATCAAAATCAAGAAAGATCACTGCTAATGCAAAGTTGTCTACTGAAAGAACACCACCAGCAAATGGTAAATCTCAAGGATTAAAAGTGTCATCTGTGGTTGATGAGCCACCTGTGTCTGATGGCTTTCTTTCTGCTGACAAAGATGGTAAAAATAACTCAAATACTTGCTTGATTTCTAAATCTGCAGCTTCTGCCACCAACTCAGTGGCATTTGATAAGCCTTTCTCAAGAAATGCAGAGTCTGCTCAATGTAATAATGCTTGTCAGAATTCAGCAAAAAAGGCTGTTCAAAGCTTAAGAAAGTCTAAAATTAGTGATGAGACTGATACTGATATAACAGGTTTTGGAATGGGACAAAGTGATAATGAATCAGAGAAAGTTAATGTCACTACAAATCTTGAGTGTCCATCACCAGGAAAGAAGTCAAAAAATGAAGTATTTGCTGGTCTTGATAATTGGGATTTAATCAATGAAGAAAGCAATAAGCTGATTAAAAAGTCACCCCGCAAGAAATCAGCTGTCAAGAGAACTTTGGGTTCTAGACCCAGAAAAGGTGTTACTGCTAAATTGAATAGTCCAGTTTGCTTGAATAAAACTATGCAGCAAGATGAAGGCGTAAGTTCCTCCAGTAGAAGCAAAGAAATATCAACTTCTTGTGCTAAGAAGCATCAGGCATCTCCCGAAATCCTTGATGTTAATAAATTGATGGAGCAAGAAAAGGTTTGTGAGTATGCTGAAGACGGTGGCAAAACTGATTTTTTGGATGATGAAACAGAGGCTCCAGATGACAAGTGTGAATATGAGTTGGGAGTGGCTCCTGACAAAGAATTGGTTCATCTTTCAAAGAAATTAGACACCTCAGCAGAAGAGAAGTTAGATGCAATTGACCGTGATAAAAAATGTGAAACAATGCCTCCTAAAAAGCTCAGTAATAAAACTGAAAAACAGAAGCCACCTTCCCTGTTAGACTCAACCTCAAAGTTAAAAGTTAAGCATCAAGCTACAAAACGTCCTGCAAGTAAAACCAAGAAGACCACAGCTGCCAAGACATTAGCGAAATCTGAAGAGGCAGCAGTATCTGGGGAGAAGATTCCTAATGAGACAAAGGATGAGGCAGAAATAAAAATCCTGAAAGAAATGTCTGTACATTCTGATATAAGTGAGAACTCAAATGTACCAAGAAATAAGCCAGATAATTTTGTTGAAGAGGAGAAGGAGAATAGACCAGATGATAGAGAACATGGTTTAGTGGAGAGGACAAGTGTTGGAACCCAAACTACTAAATCTAGTGTTAAGCCAGCAAATATCAAGTCTAAGAAAATGAAGCACAATTCATCTATATCCGAATTTAAAGCAGCAGCAAAAACTGAAGCAACATGTTTTATATTAAGTGGGCATCGCTTCCAGAGAAAGGAGTATCAACAAGTAATCAAGCGTTTGAAAGGAAGGGTTTGCCGTGATTCTCATCAGTGGTCATATCAGGCAACACACTTCATAGCCCCAGACCCTATAAGGAGGACAGAGAAGTTTTTTGCTGCTAGTGCATCAGGAAGGTGGATTCTTAAAACTGATTTCTTAACTGCTAGTAGCCAGGCAGGAAAATTATTGCCCGAGGAGCCTTATGAGTGGCACAAAAATGGTCTCAGTGAGGATGGTGCCATCAATATGGAGGCTCCAAGAAAGTGGCGACTGTTGAAAGAAAGAACAGGTCATGGTGCCTTCTATGGGATGCGCATTGTTGTATATGGCGATTGTTTTGCTCCACCTTTGGATACTCTAAAGCGTGTGGTCAAAGCTGGAGATGGAACAATATTAGCAACGTCCCCTCCATATACCCGCTTCCTTGATAGTGGAGTTGACTATGCCGTAGTTAGCCCTGGCATGTTGCGCGTTGATTTGTGGGTCCAAGAGTTCTTAAAACATGAGATACCATGTGTTGTAGCGGACTACTTGGTGGAGTATGTATGCAAGCCTGGGTTCTCCCTTGAGAAACATGTGTTGTATGGCACTCATGCTTGGGCAGATAGGTCATTTGCAAAACTTCAGAGTAAGGCAGAAGAGATTATTGAGGTCATTCCTCCTAAGGATTGCAATGATGATGATGATGTAGCTTGCCAAGTATGTGGATCCCGGGAAAGAGATGTCATGCTGATTTGTGGTGATGAAAGTGGATCTGTTGGCTGTGGAGTGGGTACACATATCGATTGCTGCAATCCTCCCCTCACAGTTGTTCCCGAGGAAGATTGGTTTTGCCCAAAATGCAGTAGCACCCAAAATTGCTCACAAAATCCCAATAAAAAGAAAAAGGGTGCATTGTCTTCATCAAAGAAGAAGTGA 3711 0.4153 MLETTHSSRIFRGVHFALYGFDPHTESQIRFKLVNGGGIDVGKNSGSCTHVIVDKIAYDNPVCIAARNDGKTLVTALWVEHSADIGMPVDANSVMYRPLKDLDGIPGAKDLIVCLTGYLRQDREDIMTMVGLMGAQFSKPLVANKVTHLICYKFEGEKYELAKKMATIKLVNHRWLEDCLKNWVLLPEDKYNKSGFELEMMVEEAKDSEDEAEDSKLGQSGGRNRSRSPLGSKFGTAVTHGLSKSLREEASNAIPDSTGPQVLPNAGKGKDSSTTTGNRTNSDQDVDLHNIGNLKVSCQVPDVSWHSTSCQLPESYVKTVESKNADVPKSSGSQDLGITGNTNASGQRPNLRDDTSETKKLSYTRSTSASADALAHSDEKLGATSYSRKNQKGFNFSREIDECDGNNLETPSTKVEKASEGIKSACVEGSGKETGVIQEDYGNNLLPQKRTNGAASTKSKSRKITANAKLSTERTPPANGKSQGLKVSSVVDEPPVSDGFLSADKDGKNNSNTCLISKSAASATNSVAFDKPFSRNAESAQCNNACQNSAKKAVQSLRKSKISDETDTDITGFGMGQSDNESEKVNVTTNLECPSPGKKSKNEVFAGLDNWDLINEESNKLIKKSPRKKSAVKRTLGSRPRKGVTAKLNSPVCLNKTMQQDEGVSSSSRSKEISTSCAKKHQASPEILDVNKLMEQEKVCEYAEDGGKTDFLDDETEAPDDKCEYELGVAPDKELVHLSKKLDTSAEEKLDAIDRDKKCETMPPKKLSNKTEKQKPPSLLDSTSKLKVKHQATKRPASKTKKTTAAKTLAKSEEAAVSGEKIPNETKDEAEIKILKEMSVHSDISENSNVPRNKPDNFVEEEKENRPDDREHGLVERTSVGTQTTKSSVKPANIKSKKMKHNSSISEFKAAAKTEATCFILSGHRFQRKEYQQVIKRLKGRVCRDSHQWSYQATHFIAPDPIRRTEKFFAASASGRWILKTDFLTASSQAGKLLPEEPYEWHKNGLSEDGAINMEAPRKWRLLKERTGHGAFYGMRIVVYGDCFAPPLDTLKRVVKAGDGTILATSPPYTRFLDSGVDYAVVSPGMLRVDLWVQEFLKHEIPCVVADYLVEYVCKPGFSLEKHVLYGTHAWADRSFAKLQSKAEEIIEVIPPKDCNDDDDVACQVCGSRERDVMLICGDESGSVGCGVGTHIDCCNPPLTVVPEEDWFCPKCSSTQNCSQNPNKKKKGALSSSKKK 1236
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre2g04279 1236 Pfam BRCA1 C Terminus (BRCT) domain 921 986 IPR001357 -
Trre2g04279 1236 Gene3D BRCT domain 1 95 IPR036420 -
Trre2g04279 1236 ProSiteProfiles Zinc finger PHD-type profile. 1160 1215 IPR019787 -
Trre2g04279 1236 Pfam twin BRCT domain 111 175 IPR001357 -
Trre2g04279 1236 MobiDBLite consensus disorder prediction 248 288 - -
Trre2g04279 1236 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1127 1228 IPR013083 -
Trre2g04279 1236 SMART BRCT_7 908 991 IPR001357 -
Trre2g04279 1236 SMART BRCT_7 1029 1116 IPR001357 -
Trre2g04279 1236 SMART BRCT_7 106 183 IPR001357 -
Trre2g04279 1236 SMART BRCT_7 8 86 IPR001357 -
Trre2g04279 1236 CDD BRCT_TopBP1_rpt7 918 991 - -
Trre2g04279 1236 MobiDBLite consensus disorder prediction 650 681 - -
Trre2g04279 1236 Pfam PHD-finger 1163 1214 IPR019787 -
Trre2g04279 1236 MobiDBLite consensus disorder prediction 570 596 - -
Trre2g04279 1236 MobiDBLite consensus disorder prediction 1214 1236 - -
Trre2g04279 1236 MobiDBLite consensus disorder prediction 204 235 - -
Trre2g04279 1236 MobiDBLite consensus disorder prediction 444 486 - -
Trre2g04279 1236 Gene3D BRCT domain 1028 1126 IPR036420 -
Trre2g04279 1236 SMART PHD_3 1162 1213 IPR001965 -
Trre2g04279 1236 Gene3D BRCT domain 99 221 IPR036420 -
Trre2g04279 1236 Gene3D BRCT domain 910 1027 IPR036420 -
Trre2g04279 1236 MobiDBLite consensus disorder prediction 753 772 - -
Trre2g04279 1236 MobiDBLite consensus disorder prediction 753 900 - -
Trre2g04279 1236 MobiDBLite consensus disorder prediction 818 840 - -
Trre2g04279 1236 ProSiteProfiles BRCT domain profile. 916 1001 IPR001357 -
Trre2g04279 1236 ProSiteProfiles BRCT domain profile. 6 96 IPR001357 -
Trre2g04279 1236 MobiDBLite consensus disorder prediction 557 599 - -
Trre2g04279 1236 SUPERFAMILY FYVE/PHD zinc finger 1154 1218 IPR011011 -
Trre2g04279 1236 SUPERFAMILY BRCT domain 918 1005 IPR036420 -
Trre2g04279 1236 PANTHER BRCA1 C TERMINUS DOMAIN CONTAINING PROTEIN, EXPRESSED 748 1227 IPR044254 -
Trre2g04279 1236 MobiDBLite consensus disorder prediction 322 351 - -
Trre2g04279 1236 MobiDBLite consensus disorder prediction 443 505 - -
Trre2g04279 1236 MobiDBLite consensus disorder prediction 622 683 - -
Trre2g04279 1236 MobiDBLite consensus disorder prediction 267 288 - -
Trre2g04279 1236 SUPERFAMILY BRCT domain 109 192 IPR036420 -
Trre2g04279 1236 ProSiteProfiles BRCT domain profile. 109 193 IPR001357 -
Trre2g04279 1236 MobiDBLite consensus disorder prediction 877 892 - -
Trre2g04279 1236 SUPERFAMILY BRCT domain 8 92 IPR036420 -
Trre2g04279 1236 MobiDBLite consensus disorder prediction 855 876 - -
Trre2g04279 1236 MobiDBLite consensus disorder prediction 322 375 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre2g04279 Trre-Chr2 50378590 50386060 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre2g04279 129 244 Core DNA Replication Machinery Family AT4G02110 63.793 2.09e-38 154
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Trre2g04279 BRCT 4.4e-08 CL0459
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre2g04279 K10728 - cave:132171163 993.801