Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Trre2g04279 | ATGCTTGAAACCACTCACTCATCGCGAATCTTTCGCGGTGTTCATTTTGCTCTCTATGGTTTCGATCCTCACACAGAATCTCAGATACGATTCAAGCTTGTTAATGGCGGTGGAATTGATGTGGGGAAAAACAGTGGTAGTTGCACGCATGTCATTGTTGATAAGATTGCTTATGATAATCCTGTGTGTATTGCTGCTAGAAATGATGGAAAAACGTTGGTCACTGCATTGTGGGTTGAACACAGTGCTGATATTGGAATGCCTGTTGATGCTAACTCGGTTATGTACAGACCGCTGAAAGATTTGGATGGCATTCCAGGTGCAAAAGATTTGATTGTCTGCTTGACTGGCTATCTACGCCAGGATCGGGAAGACATTATGACAATGGTTGGCCTGATGGGTGCACAATTTTCTAAACCGTTGGTGGCAAACAAGGTTACCCATCTTATATGCTACAAATTTGAAGGGGAGAAGTACGAGCTTGCCAAGAAAATGGCCACAATAAAGCTAGTTAATCATCGTTGGCTGGAAGATTGCTTGAAGAATTGGGTGCTTCTTCCTGAAGACAAATATAACAAGAGTGGTTTTGAACTGGAGATGATGGTGGAAGAGGCTAAGGATTCTGAGGATGAGGCTGAAGATTCTAAGCTGGGGCAATCAGGGGGAAGGAATAGAAGCAGAAGTCCCCTTGGTTCAAAATTTGGTACAGCTGTAACTCATGGATTGTCAAAATCTTTAAGAGAGGAGGCATCAAATGCCATCCCAGATTCTACTGGTCCTCAGGTTTTGCCAAACGCCGGTAAGGGTAAAGACTCTTCAACTACTACAGGAAATAGGACCAATTCTGATCAAGACGTAGACTTGCATAATATTGGCAACCTGAAGGTAAGCTGTCAGGTTCCTGATGTTTCTTGGCACTCTACATCATGTCAGCTACCTGAATCATATGTTAAGACCGTTGAGTCTAAGAATGCTGATGTTCCAAAGTCATCTGGTTCCCAGGATCTTGGCATTACCGGAAATACAAATGCATCTGGTCAGCGACCTAATCTGCGTGATGACACTTCGGAGACGAAGAAGTTAAGTTACACAAGATCAACTTCTGCAAGTGCTGATGCACTTGCACATTCAGATGAAAAGCTCGGTGCTACAAGTTATTCTAGGAAGAACCAAAAAGGGTTTAACTTTTCAAGGGAAATTGACGAATGTGACGGCAACAACCTTGAAACCCCTTCCACCAAGGTAGAAAAGGCAAGTGAAGGAATCAAATCTGCCTGTGTTGAAGGTTCTGGGAAAGAAACTGGTGTTATTCAAGAGGATTATGGAAATAATTTATTGCCTCAAAAGAGGACGAATGGAGCCGCTTCAACCAAATCAAAATCAAGAAAGATCACTGCTAATGCAAAGTTGTCTACTGAAAGAACACCACCAGCAAATGGTAAATCTCAAGGATTAAAAGTGTCATCTGTGGTTGATGAGCCACCTGTGTCTGATGGCTTTCTTTCTGCTGACAAAGATGGTAAAAATAACTCAAATACTTGCTTGATTTCTAAATCTGCAGCTTCTGCCACCAACTCAGTGGCATTTGATAAGCCTTTCTCAAGAAATGCAGAGTCTGCTCAATGTAATAATGCTTGTCAGAATTCAGCAAAAAAGGCTGTTCAAAGCTTAAGAAAGTCTAAAATTAGTGATGAGACTGATACTGATATAACAGGTTTTGGAATGGGACAAAGTGATAATGAATCAGAGAAAGTTAATGTCACTACAAATCTTGAGTGTCCATCACCAGGAAAGAAGTCAAAAAATGAAGTATTTGCTGGTCTTGATAATTGGGATTTAATCAATGAAGAAAGCAATAAGCTGATTAAAAAGTCACCCCGCAAGAAATCAGCTGTCAAGAGAACTTTGGGTTCTAGACCCAGAAAAGGTGTTACTGCTAAATTGAATAGTCCAGTTTGCTTGAATAAAACTATGCAGCAAGATGAAGGCGTAAGTTCCTCCAGTAGAAGCAAAGAAATATCAACTTCTTGTGCTAAGAAGCATCAGGCATCTCCCGAAATCCTTGATGTTAATAAATTGATGGAGCAAGAAAAGGTTTGTGAGTATGCTGAAGACGGTGGCAAAACTGATTTTTTGGATGATGAAACAGAGGCTCCAGATGACAAGTGTGAATATGAGTTGGGAGTGGCTCCTGACAAAGAATTGGTTCATCTTTCAAAGAAATTAGACACCTCAGCAGAAGAGAAGTTAGATGCAATTGACCGTGATAAAAAATGTGAAACAATGCCTCCTAAAAAGCTCAGTAATAAAACTGAAAAACAGAAGCCACCTTCCCTGTTAGACTCAACCTCAAAGTTAAAAGTTAAGCATCAAGCTACAAAACGTCCTGCAAGTAAAACCAAGAAGACCACAGCTGCCAAGACATTAGCGAAATCTGAAGAGGCAGCAGTATCTGGGGAGAAGATTCCTAATGAGACAAAGGATGAGGCAGAAATAAAAATCCTGAAAGAAATGTCTGTACATTCTGATATAAGTGAGAACTCAAATGTACCAAGAAATAAGCCAGATAATTTTGTTGAAGAGGAGAAGGAGAATAGACCAGATGATAGAGAACATGGTTTAGTGGAGAGGACAAGTGTTGGAACCCAAACTACTAAATCTAGTGTTAAGCCAGCAAATATCAAGTCTAAGAAAATGAAGCACAATTCATCTATATCCGAATTTAAAGCAGCAGCAAAAACTGAAGCAACATGTTTTATATTAAGTGGGCATCGCTTCCAGAGAAAGGAGTATCAACAAGTAATCAAGCGTTTGAAAGGAAGGGTTTGCCGTGATTCTCATCAGTGGTCATATCAGGCAACACACTTCATAGCCCCAGACCCTATAAGGAGGACAGAGAAGTTTTTTGCTGCTAGTGCATCAGGAAGGTGGATTCTTAAAACTGATTTCTTAACTGCTAGTAGCCAGGCAGGAAAATTATTGCCCGAGGAGCCTTATGAGTGGCACAAAAATGGTCTCAGTGAGGATGGTGCCATCAATATGGAGGCTCCAAGAAAGTGGCGACTGTTGAAAGAAAGAACAGGTCATGGTGCCTTCTATGGGATGCGCATTGTTGTATATGGCGATTGTTTTGCTCCACCTTTGGATACTCTAAAGCGTGTGGTCAAAGCTGGAGATGGAACAATATTAGCAACGTCCCCTCCATATACCCGCTTCCTTGATAGTGGAGTTGACTATGCCGTAGTTAGCCCTGGCATGTTGCGCGTTGATTTGTGGGTCCAAGAGTTCTTAAAACATGAGATACCATGTGTTGTAGCGGACTACTTGGTGGAGTATGTATGCAAGCCTGGGTTCTCCCTTGAGAAACATGTGTTGTATGGCACTCATGCTTGGGCAGATAGGTCATTTGCAAAACTTCAGAGTAAGGCAGAAGAGATTATTGAGGTCATTCCTCCTAAGGATTGCAATGATGATGATGATGTAGCTTGCCAAGTATGTGGATCCCGGGAAAGAGATGTCATGCTGATTTGTGGTGATGAAAGTGGATCTGTTGGCTGTGGAGTGGGTACACATATCGATTGCTGCAATCCTCCCCTCACAGTTGTTCCCGAGGAAGATTGGTTTTGCCCAAAATGCAGTAGCACCCAAAATTGCTCACAAAATCCCAATAAAAAGAAAAAGGGTGCATTGTCTTCATCAAAGAAGAAGTGA | 3711 | 0.4153 | MLETTHSSRIFRGVHFALYGFDPHTESQIRFKLVNGGGIDVGKNSGSCTHVIVDKIAYDNPVCIAARNDGKTLVTALWVEHSADIGMPVDANSVMYRPLKDLDGIPGAKDLIVCLTGYLRQDREDIMTMVGLMGAQFSKPLVANKVTHLICYKFEGEKYELAKKMATIKLVNHRWLEDCLKNWVLLPEDKYNKSGFELEMMVEEAKDSEDEAEDSKLGQSGGRNRSRSPLGSKFGTAVTHGLSKSLREEASNAIPDSTGPQVLPNAGKGKDSSTTTGNRTNSDQDVDLHNIGNLKVSCQVPDVSWHSTSCQLPESYVKTVESKNADVPKSSGSQDLGITGNTNASGQRPNLRDDTSETKKLSYTRSTSASADALAHSDEKLGATSYSRKNQKGFNFSREIDECDGNNLETPSTKVEKASEGIKSACVEGSGKETGVIQEDYGNNLLPQKRTNGAASTKSKSRKITANAKLSTERTPPANGKSQGLKVSSVVDEPPVSDGFLSADKDGKNNSNTCLISKSAASATNSVAFDKPFSRNAESAQCNNACQNSAKKAVQSLRKSKISDETDTDITGFGMGQSDNESEKVNVTTNLECPSPGKKSKNEVFAGLDNWDLINEESNKLIKKSPRKKSAVKRTLGSRPRKGVTAKLNSPVCLNKTMQQDEGVSSSSRSKEISTSCAKKHQASPEILDVNKLMEQEKVCEYAEDGGKTDFLDDETEAPDDKCEYELGVAPDKELVHLSKKLDTSAEEKLDAIDRDKKCETMPPKKLSNKTEKQKPPSLLDSTSKLKVKHQATKRPASKTKKTTAAKTLAKSEEAAVSGEKIPNETKDEAEIKILKEMSVHSDISENSNVPRNKPDNFVEEEKENRPDDREHGLVERTSVGTQTTKSSVKPANIKSKKMKHNSSISEFKAAAKTEATCFILSGHRFQRKEYQQVIKRLKGRVCRDSHQWSYQATHFIAPDPIRRTEKFFAASASGRWILKTDFLTASSQAGKLLPEEPYEWHKNGLSEDGAINMEAPRKWRLLKERTGHGAFYGMRIVVYGDCFAPPLDTLKRVVKAGDGTILATSPPYTRFLDSGVDYAVVSPGMLRVDLWVQEFLKHEIPCVVADYLVEYVCKPGFSLEKHVLYGTHAWADRSFAKLQSKAEEIIEVIPPKDCNDDDDVACQVCGSRERDVMLICGDESGSVGCGVGTHIDCCNPPLTVVPEEDWFCPKCSSTQNCSQNPNKKKKGALSSSKKK | 1236 |
Showing 1 to 1 of 1 entries
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Trre2g04279 | 1236 | Pfam | BRCA1 C Terminus (BRCT) domain | 921 | 986 | IPR001357 | - | |
| Trre2g04279 | 1236 | Gene3D | BRCT domain | 1 | 95 | IPR036420 | - | |
| Trre2g04279 | 1236 | ProSiteProfiles | Zinc finger PHD-type profile. | 1160 | 1215 | IPR019787 | - | |
| Trre2g04279 | 1236 | Pfam | twin BRCT domain | 111 | 175 | IPR001357 | - | |
| Trre2g04279 | 1236 | MobiDBLite | consensus disorder prediction | 248 | 288 | - | - | |
| Trre2g04279 | 1236 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 1127 | 1228 | IPR013083 | - | |
| Trre2g04279 | 1236 | SMART | BRCT_7 | 908 | 991 | IPR001357 | - | |
| Trre2g04279 | 1236 | SMART | BRCT_7 | 1029 | 1116 | IPR001357 | - | |
| Trre2g04279 | 1236 | SMART | BRCT_7 | 106 | 183 | IPR001357 | - | |
| Trre2g04279 | 1236 | SMART | BRCT_7 | 8 | 86 | IPR001357 | - |
Showing 1 to 10 of 40 entries
Duplication type information
Functional genes information
Transcription factors information
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Trre2g04279 | K10728 | - | cave:132171163 | 993.801 |
Showing 1 to 1 of 1 entries