Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre2g04276 ATGGCATCTACTTCAAGGAGATTACCAACACCTCAAGAAAGAGAAAAATGGAAACACATTTTTGACACTATCATAGATCCAAATCTGGCACCAATTGAAATCCCTCAACCTTTTTTCCACAAAATGAAAGGTGAGTTTATAAAACACACATTTGGTGGATCAGGGGTCCAAAAAAAAATGAAAATCATGGTTAGATATCTCCAATCCAATAGTGGTATCAAGCTCTCCTCTGGAGTGTGTGTTTCTCGATATTTTGGATTTGTTATACCAACAAGGGTGACACTTAGCTATGTGATTGAAGAGAATACTTTTTGGATGAGAATTTACCCTCCACTTCAACCTGTGAAAACTGAATTTCCACCTCAGGCAACTTTGAAAAGGAAACATCAAAAGGAGATATTAGGCAATAATGATGATCAAGATGAGCCAAATTCCAATAGGTGCAAGAGACCTAAAGGCAACAAACAAGCTCCCCCTCCATGTCAAAGACAGAAAATTCTGAAGTCTACCCCAAAGGAATTAAGCAAACGACGACACCCAAATTTGAAGATTCGTGCATCTCAGAAAAAAAAAGATTTGAAATCCACACCAAAGAAATCAAACAAACAACATCAGTATAAGCATTCAAGGAGACCAGCCATTGTAAAGCTGAATCATGATGGAAGCTATGGTTGGGAGAAGATTGTAACTAGAGCTGGTGTAGCCGATGCAAGACCTCAAGTCATGCATTTTCCTAAGCAATTTTCTAGATTGTTTTTGGGAAAAAAACAAAACAAAGTGTTGGTCCAAGCTGAAGCAGGAGATACATTCTCTTGCAAGATTATGACAGCGACAAGGAATAGAGATGAAAAATACATATCAAAAGAGTGGACCAAATTTGTGAGAAGAAACAACCTTCAAGTTGGAGACAAGCTCATTTTCACTCTTCAAAACCAACCAACAAAACTCTTGGTTCAGATCATCCGTTGTAGTGTGCATGATTGA 984 0.3791 MASTSRRLPTPQEREKWKHIFDTIIDPNLAPIEIPQPFFHKMKGEFIKHTFGGSGVQKKMKIMVRYLQSNSGIKLSSGVCVSRYFGFVIPTRVTLSYVIEENTFWMRIYPPLQPVKTEFPPQATLKRKHQKEILGNNDDQDEPNSNRCKRPKGNKQAPPPCQRQKILKSTPKELSKRRHPNLKIRASQKKKDLKSTPKKSNKQHQYKHSRRPAIVKLNHDGSYGWEKIVTRAGVADARPQVMHFPKQFSRLFLGKKQNKVLVQAEAGDTFSCKIMTATRNRDEKYISKEWTKFVRRNNLQVGDKLIFTLQNQPTKLLVQIIRCSVHD 327
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre2g04276 327 Pfam B3 DNA binding domain 242 322 IPR003340 GO:0003677
Trre2g04276 327 MobiDBLite consensus disorder prediction 195 212 - -
Trre2g04276 327 CDD B3_DNA 242 322 IPR003340 GO:0003677
Trre2g04276 327 SUPERFAMILY DNA-binding pseudobarrel domain 240 323 IPR015300 -
Trre2g04276 327 MobiDBLite consensus disorder prediction 131 149 - -
Trre2g04276 327 MobiDBLite consensus disorder prediction 131 213 - -
Trre2g04276 327 Gene3D - 161 324 IPR015300 -
Trre2g04276 327 ProSiteProfiles B3 DNA-binding domain profile. 227 324 IPR003340 GO:0003677
Trre2g04276 327 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS11G0197600-RELATED 134 323 IPR044837 -
Trre2g04276 327 SMART B3_2 226 324 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre2g04276 Trre-Chr2 50348618 50350341 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Trre2g04276 B3 1e-10 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre2g04276 - K16812 tpra:123904760 177.178