Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Trre2g04270 | ATGGGAGAAGTTGTTTTGTTGGTTGATGATTTGAAATCAATTTCTGGATTTTCTCGTTGTAGAATATGTCATGAAGAAGAATTTGAGAGCTTCAAAAGCTTAGAAGCTCCTTGTGCTTGTTCTGGTACTGTTAAGTTTGCTCATAGAGATTGCATTCAAACATGGTGTAATGAGAAAGGAAACACAACTTGTGAAATTTGTTTACAGCAATATGAACCTGGATATATAGCACCGCCACCAAAGAAACCTCAAAAATCTGATGAAGCAATGACCATTGGAATTAGAGATAGCCTTGAAATATCATCAAGGAGGGAGGAAGAAGGTATAAACAGAAGAATAGTTGGTAATGTAATACTAAGAAGACAACAAAACAATTACTCTGAATGCAACTATGCTGCTGATAGAAGCGCGTCTTGTTGTCGATCACTTGCTTTAGCTTTTACTCTTATATTACTTCTAAGACATCTTTTTGCTTTGCTTACAAATGGAATGGAAGATTATCCATTTACAATTCTTACAATCTTTATGCTAAGGGCCAGTGGAATTATTATACCTATGTGCATAATTATTAGGACTATGGGTGCTATTCATAAAAGTATTCAGCGTCATTATCAACAGGATTCTGAGGATGAGTCATCAATGTCTGATGGAGATGATGAAGAAAATGAGACATCATCACATATTGCAATTTTAAGACATTCACATTATTAG | 711 | 0.3474 | MGEVVLLVDDLKSISGFSRCRICHEEEFESFKSLEAPCACSGTVKFAHRDCIQTWCNEKGNTTCEICLQQYEPGYIAPPPKKPQKSDEAMTIGIRDSLEISSRREEEGINRRIVGNVILRRQQNNYSECNYAADRSASCCRSLALAFTLILLLRHLFALLTNGMEDYPFTILTIFMLRASGIIIPMCIIIRTMGAIHKSIQRHYQQDSEDESSMSDGDDEENETSSHIAILRHSHY | 236 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Trre2g04270 | 236 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 11 | 75 | IPR013083 | - | |
| Trre2g04270 | 236 | SUPERFAMILY | RING/U-box | 18 | 72 | - | - | |
| Trre2g04270 | 236 | FunFam | E3 ubiquitin-protein ligase MARCH4 | 9 | 77 | - | - | |
| Trre2g04270 | 236 | Pfam | RING-variant domain | 20 | 67 | IPR011016 | GO:0008270 | |
| Trre2g04270 | 236 | CDD | RING_CH-C4HC3_MARCH | 20 | 67 | - | - | |
| Trre2g04270 | 236 | PANTHER | RING/FYVE/PHD ZINC FINGER DOMAIN-CONTAINING | 18 | 203 | IPR033275 | - | |
| Trre2g04270 | 236 | ProSiteProfiles | Zinc finger RING-CH-type profile. | 12 | 74 | IPR011016 | GO:0008270 | |
| Trre2g04270 | 236 | Pfam | Protein of unknown function (DUF3675) | 73 | 193 | IPR022143 | - | |
| Trre2g04270 | 236 | SMART | ringv_2 | 19 | 68 | IPR011016 | GO:0008270 | |
| Trre2g04270 | 236 | MobiDBLite | consensus disorder prediction | 202 | 225 | - | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Trre2g04270 | Trre-Chr2 | 50246590 | 50249970 | Wgd |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Trre2g04270 | 20 | 67 | C3H Transcription Factor Family | AT2G37950 | 44.898 | 4.03e-07 | 47.4 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Trre2g04270 | - | - | gmx:100797029 | 316.62 |