Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Trre2g04270 ATGGGAGAAGTTGTTTTGTTGGTTGATGATTTGAAATCAATTTCTGGATTTTCTCGTTGTAGAATATGTCATGAAGAAGAATTTGAGAGCTTCAAAAGCTTAGAAGCTCCTTGTGCTTGTTCTGGTACTGTTAAGTTTGCTCATAGAGATTGCATTCAAACATGGTGTAATGAGAAAGGAAACACAACTTGTGAAATTTGTTTACAGCAATATGAACCTGGATATATAGCACCGCCACCAAAGAAACCTCAAAAATCTGATGAAGCAATGACCATTGGAATTAGAGATAGCCTTGAAATATCATCAAGGAGGGAGGAAGAAGGTATAAACAGAAGAATAGTTGGTAATGTAATACTAAGAAGACAACAAAACAATTACTCTGAATGCAACTATGCTGCTGATAGAAGCGCGTCTTGTTGTCGATCACTTGCTTTAGCTTTTACTCTTATATTACTTCTAAGACATCTTTTTGCTTTGCTTACAAATGGAATGGAAGATTATCCATTTACAATTCTTACAATCTTTATGCTAAGGGCCAGTGGAATTATTATACCTATGTGCATAATTATTAGGACTATGGGTGCTATTCATAAAAGTATTCAGCGTCATTATCAACAGGATTCTGAGGATGAGTCATCAATGTCTGATGGAGATGATGAAGAAAATGAGACATCATCACATATTGCAATTTTAAGACATTCACATTATTAG 711 0.3474 MGEVVLLVDDLKSISGFSRCRICHEEEFESFKSLEAPCACSGTVKFAHRDCIQTWCNEKGNTTCEICLQQYEPGYIAPPPKKPQKSDEAMTIGIRDSLEISSRREEEGINRRIVGNVILRRQQNNYSECNYAADRSASCCRSLALAFTLILLLRHLFALLTNGMEDYPFTILTIFMLRASGIIIPMCIIIRTMGAIHKSIQRHYQQDSEDESSMSDGDDEENETSSHIAILRHSHY 236
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Trre2g04270 236 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 11 75 IPR013083 -
Trre2g04270 236 SUPERFAMILY RING/U-box 18 72 - -
Trre2g04270 236 FunFam E3 ubiquitin-protein ligase MARCH4 9 77 - -
Trre2g04270 236 Pfam RING-variant domain 20 67 IPR011016 GO:0008270
Trre2g04270 236 CDD RING_CH-C4HC3_MARCH 20 67 - -
Trre2g04270 236 PANTHER RING/FYVE/PHD ZINC FINGER DOMAIN-CONTAINING 18 203 IPR033275 -
Trre2g04270 236 ProSiteProfiles Zinc finger RING-CH-type profile. 12 74 IPR011016 GO:0008270
Trre2g04270 236 Pfam Protein of unknown function (DUF3675) 73 193 IPR022143 -
Trre2g04270 236 SMART ringv_2 19 68 IPR011016 GO:0008270
Trre2g04270 236 MobiDBLite consensus disorder prediction 202 225 - -
       

Duplication type information


Select Gene Chromosome Start End Duplicated_type
Trre2g04270 Trre-Chr2 50246590 50249970 Wgd
       

Functional genes information


Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre2g04270 20 67 C3H Transcription Factor Family AT2G37950 44.898 4.03e-07 47.4
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre2g04270 - - gmx:100797029 316.62