Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre2g04251 ATGGGTGTGAAGAGTGAGGAAGATGTTAATATTGATTCTTCATCTTTGTTAAACAATTATCAATTTTCAAGCGTGTTTGATTTCTGTGAGGTAGAAAAAAGCTCTGCTTTAGGGTTTATGGAGTTACTAGGTGTTCAAGATTATACTCCTCTGCTTGATGTACCTCAACTATCAGTATCAACCATGTCTATGAAAACTACTACAGTTATGGCTTCATCTGATACTGGAAAAGACTCTTCTCAGGTTTTGAACCAACAACAACCTGCAACTCCTAACTCTTGTTCGATTTCATCGGCATCTAGTGAAGCTGTTAATGATAATAAGCCTCTTGTTGAACTTGAACAAACTGAAGAAGATGATGAAGGAGATGCAGATGAAAAGCACCAAAAGTCCAACAAACAGTTGAAGACGAAGAAAACAAATCAAAAGAAACAGAGAGAACCAAGATTTGCATTCATGACAAAAAGTGAGGTGGATCATTTAGAAGATGGGTACAGATGGAGAAAGTACGGTCAAAAAGCTGTAAAAAACAGCCCCTTTCCAAGGAGCTACTATCGTTGCACCACTGTTTCATGTAATGTGAAGAAACGTGTTGAACGTTCTTTTACTGATCCAAGTATTGTAGTAACAACTTATGAAGGCCAACACACTCATCCAAGTCCAGCTATGTCGCGTTCCGCCTTCATCGGAACTCAAATAGCACCATCGGCCGGTTTAGTCTCCGGTGGATTTCCTACTAACTATGGCTCCGTTTTGCAAGGAAACTACTTATCCTCACCATCATCACAGTATCATCAGCAACAACAACATCAACATCAACAACTACTTGTTAATACATTGTCCTCTATGAATCATCCTTATAACAATTCTTCAGATTTTACTCAAGAGAGAAAGCTTTGTAATCAAGTGACAACTGCTGCATTTCTTAGGGATCATGGACTTCTTCAAGATGTTGTTCCTTCACATATGTTGAAAGAAGAGTAG 984 0.3852 MGVKSEEDVNIDSSSLLNNYQFSSVFDFCEVEKSSALGFMELLGVQDYTPLLDVPQLSVSTMSMKTTTVMASSDTGKDSSQVLNQQQPATPNSCSISSASSEAVNDNKPLVELEQTEEDDEGDADEKHQKSNKQLKTKKTNQKKQREPRFAFMTKSEVDHLEDGYRWRKYGQKAVKNSPFPRSYYRCTTVSCNVKKRVERSFTDPSIVVTTYEGQHTHPSPAMSRSAFIGTQIAPSAGLVSGGFPTNYGSVLQGNYLSSPSSQYHQQQQHQHQQLLVNTLSSMNHPYNNSSDFTQERKLCNQVTTAAFLRDHGLLQDVVPSHMLKEE 327
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre2g04251 327 Pfam WRKY DNA -binding domain 162 219 IPR003657 GO:0003700|GO:0006355|GO:0043565
Trre2g04251 327 PIRSF WRKY_txn_fact_IIc 1 327 IPR017396 GO:0003700
Trre2g04251 327 ProSiteProfiles WRKY domain profile. 156 221 IPR003657 GO:0003700|GO:0006355|GO:0043565
Trre2g04251 327 SUPERFAMILY WRKY DNA-binding domain 153 221 IPR036576 GO:0003700|GO:0006355|GO:0043565
Trre2g04251 327 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 67 273 IPR044810 GO:0003700
Trre2g04251 327 SMART WRKY_cls 161 220 IPR003657 GO:0003700|GO:0006355|GO:0043565
Trre2g04251 327 MobiDBLite consensus disorder prediction 70 149 - -
Trre2g04251 327 Gene3D WRKY domain 146 222 IPR036576 GO:0003700|GO:0006355|GO:0043565
Trre2g04251 327 MobiDBLite consensus disorder prediction 70 105 - -
Trre2g04251 327 FunFam WRKY transcription factor 57 147 221 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre2g04251 Trre-Chr2 50031262 50032780 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre2g04251 24 327 WRKY Transcription Factor Family AT2G47260 49.401 4.83e-71 222
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Trre2g04251 WRKY 2.8e-26 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre2g04251 - - gmx:732591 372.474