Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre2g04241 ATGATTGATAGCATCACAGTGTTGTTCTTTTTATGTTCCTACATGAGAACAAGCACTTCAATTGATAGTTTATCTATGAATCAATCCATCAAAGATGGCGAAACATTAGTTTCAGCTAATGGAACTTTTGAAATGGGTTTCTTCAGTCCTAGAAATTCAAAAGGTCGTTATTTGGGTATGTGGTATAAAAAGTTAACCCCTTTAACGGTTCTATGGGTGGCTAATAGGGAAACACCAGTGTACAATAACTCAGGTGTCTTAAAACTCAATGAAATCGGCTTTCTTGTCGTTCTCAATGGAGAAAACACAACTGTTTGGTCCTCCAACATATCAAACAAAGTCGTCATCAATAATTCAATAACTGCTAAGTTCTTGGAAACTGGGAATCTTGTGTTGAAAAATAGGAAGGGGAATATTTTGTGGCAGAGTTTTGATTATCCAACTGATACACTTATGCCGGGAATGAAGATTGGATGGAACTTTGTAACTGGACTAAACAAGATGCAAACGTCGTGGAAGAGTGCAGATGATCCTGCAAAGGGAGAATATGTTAGTGCTGTTGACCCTAGAGGATATCCCCAAGTAGCTATTTTGAAGGGATCTGTCATAAAATTGAGAATAGGATCATGGAACGGACGTGCTTTTACTGGATATCCAACACCGCCATTGAAAGAAAAGGAAAAGTTTGAATTTGTCATAACTGACAAGGAAGTGTATCATAGTTTTGAAGTTGTTGATAGCTCTATTATTTGCATATATAAATTATCTATTGTAGGAAATTTGCAGGCTTTATGTTGGACAAGTCAATCAAGCTCCAGGATAATTATCTACACCGGTGCAGAAGATTCGTGTGATAATTATGCTATGTGTGGTGCTAATTCTATATGTAATATGGATGGTAACGTTCCTCAATGTGAATGCCTGAAAAGCTATGTTCCTAAATTTCCTGAACAATGGAATATATCGTATTGGTCTAGTGGTTGTATTCCAAAAATTTTATCGGTTTGTGGAAACAATAACACAAGTGGATTCTTCAAGTATAGTGAAATGAAATTGCCAGACACGTCTTCATCATGGTATAATAAGACTATGAATCTTGTGGAATGTCAGAAGACATGTATAAAAAATTGTTCGTGTACAGGTTATGCAAATCTGGATATCCGAAATGGAGGAAGCGGTTGTCTTCTTTGGTTTGGTGATCTGGTTGACATGAGAGTATTCTCCCAATGGGGACAAGACCTCTATATCAGAGTACCTTCTTCAGAACTTGACTACCTTAGTGTCGATGCCCTTCGAAGCAAGAAAAAGCAGCTGATGCGGATCATACTTGTATTGATTACTGTTGGAGTTTTCGTATGTGCCTGCATAATGATATTTATCAGGAGAGCTGCACAGAGAGGATACCGTCTTGCACCATTTCAAAAGCGGAAACTATATTGTAGATTGAGAAAGGAAGACATGGATCTTCCAATATTTGATTTTTCAGTTCTTGTTAAAGTCACTAATAACTTTTCTAGCGTAAATAAAATCGGGGAAGGAGGATTTGGACCAGTGTATAAGGGTACGCTCGTAGAAGGGAAGGAGGTAGCCATAAAACGGCACTCAAAAGTGTCAGATCAAGGATTGGAAGAGTTTAAAAATGAAATTGTGTTGATTGCAAAACTTCAGCACCGTAATCTTGTGAAGCTTCTTGGTTGCTCTAGTCATAAAGAGGAAATGTTGCTGATATATGAATACATGCCCAACAAGAGCTTAGACTACTTTATCTTTGATGAAACGAGAAGCGAGCTCTTGGGCTGGACTCACCGTTCTAACATTATTGCTGGCATTGCTAAAGGTCTTCTTTATCTTCACCAAGACTCTAGACTCAAAATTATTCATAGAGATTTGAAAACGAGCAATATCCTGTTAGATGCCCATATGAATCCAAAAATCTCAGATTTTGGCTTGGCTCGGCTATTTGGCGGAGATCAAATTGAAGCCAAAACAAGAAAACTGGTTGGGACCTATGGTTACATGCCTCCAGAGTATGCTGTACATGGTCGTTACTCTATGAAATCAGATGTGTATAGTTTTGGTGTAATAATATTAGAGATAATCAGTGGGAAAAAGATCAAGGGCTTTTATGACCCAACATACTCTCTCAACCTTCTTGGATATGCTTGGAGACTCTGGATTGAAAACATGCCATTGGAACTACTAGATCCACATTTACTTGATATGTGCATTTCTTCTGAAGTCATACGATGCATACATGTGGGGTTATTATGCGTACAACAAAAACCCGATGATAGGCCATGCATGTCCTCTGTCATTCTTATGTTAAATGGTGAGAAATTGTTGCCTCAACCAAAGGCTCCTGGATTTTATACTGGCCAAGTTTCAAGTGAAACCCCATCCTCTTCCTCAAATCATATGTCATTTACAATTTTTGAGCCAAGATAG 2445 0.3804 MIDSITVLFFLCSYMRTSTSIDSLSMNQSIKDGETLVSANGTFEMGFFSPRNSKGRYLGMWYKKLTPLTVLWVANRETPVYNNSGVLKLNEIGFLVVLNGENTTVWSSNISNKVVINNSITAKFLETGNLVLKNRKGNILWQSFDYPTDTLMPGMKIGWNFVTGLNKMQTSWKSADDPAKGEYVSAVDPRGYPQVAILKGSVIKLRIGSWNGRAFTGYPTPPLKEKEKFEFVITDKEVYHSFEVVDSSIICIYKLSIVGNLQALCWTSQSSSRIIIYTGAEDSCDNYAMCGANSICNMDGNVPQCECLKSYVPKFPEQWNISYWSSGCIPKILSVCGNNNTSGFFKYSEMKLPDTSSSWYNKTMNLVECQKTCIKNCSCTGYANLDIRNGGSGCLLWFGDLVDMRVFSQWGQDLYIRVPSSELDYLSVDALRSKKKQLMRIILVLITVGVFVCACIMIFIRRAAQRGYRLAPFQKRKLYCRLRKEDMDLPIFDFSVLVKVTNNFSSVNKIGEGGFGPVYKGTLVEGKEVAIKRHSKVSDQGLEEFKNEIVLIAKLQHRNLVKLLGCSSHKEEMLLIYEYMPNKSLDYFIFDETRSELLGWTHRSNIIAGIAKGLLYLHQDSRLKIIHRDLKTSNILLDAHMNPKISDFGLARLFGGDQIEAKTRKLVGTYGYMPPEYAVHGRYSMKSDVYSFGVIILEIISGKKIKGFYDPTYSLNLLGYAWRLWIENMPLELLDPHLLDMCISSEVIRCIHVGLLCVQQKPDDRPCMSSVILMLNGEKLLPQPKAPGFYTGQVSSETPSSSSNHMSFTIFEPR 814
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre2g04241 814 ProSiteProfiles PAN/Apple domain profile. 336 419 IPR003609 -
Trre2g04241 814 MobiDBLite consensus disorder prediction 792 814 - -
Trre2g04241 814 ProSiteProfiles Bulb-type lectin domain profile. 21 145 IPR001480 -
Trre2g04241 814 CDD B_lectin 27 147 IPR001480 -
Trre2g04241 814 Gene3D Transferase(Phosphotransferase) domain 1 580 782 - -
Trre2g04241 814 PANTHER BULB-TYPE LECTIN DOMAIN-CONTAINING PROTEIN 8 765 - -
Trre2g04241 814 Gene3D Hepatocyte Growth Factor 336 414 - -
Trre2g04241 814 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 335 418 - -
Trre2g04241 814 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 580 783 - -
Trre2g04241 814 Pfam Protein kinase domain 505 705 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre2g04241 814 SUPERFAMILY Protein kinase-like (PK-like) 487 803 IPR011009 -
Trre2g04241 814 Pfam D-mannose binding lectin 69 173 IPR001480 -
Trre2g04241 814 SMART ntp_6 339 418 IPR003609 -
Trre2g04241 814 ProSitePatterns Serine/Threonine protein kinases active-site signature. 625 637 IPR008271 GO:0004672|GO:0006468
Trre2g04241 814 ProSiteProfiles Protein kinase domain profile. 504 781 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre2g04241 814 SUPERFAMILY alpha-D-mannose-specific plant lectins 70 178 IPR036426 -
Trre2g04241 814 SMART serkin_6 504 775 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre2g04241 814 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 471 579 - -
Trre2g04241 814 Pfam PAN-like domain 336 404 IPR003609 -
Trre2g04241 814 SMART blect_4 27 147 IPR001480 -
Trre2g04241 814 Gene3D - 16 144 IPR036426 -
Trre2g04241 814 PIRSF SRK 1 813 IPR024171 GO:0004674
Trre2g04241 814 CDD STKc_IRAK 510 777 - -
Trre2g04241 814 Gene3D Phosphorylase Kinase; domain 1 470 579 - -
Trre2g04241 814 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 16 144 - -
Trre2g04241 814 CDD PAN_AP_plant 336 419 - -
Trre2g04241 814 Pfam S-locus glycoprotein domain 206 315 IPR000858 GO:0048544
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre2g04241 Trre-Chr2 49923555 49926832 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre2g04241 442 790 Receptor kinase-like Gene Family AT4G23190 54.318 9.56e-127 390
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Trre2g04241 Pkinase 1e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre2g04241 - - aprc:113865090 1081.63