Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre2g04219 ATGGATGTGAAAGACATACTCAGATTGCCCCAAATTTCCTTCCCAGTTCAGGAGAAGAATTCTCAATCTCAGAGAAAACCCGATGCCATTTCTCAGGAGGTTTATGCACTTACGGGTGGATTGACACCTCTTATACCTGCAGTTGATTTGTCTCTGTTGAATAAAAGACCTCCAACAAACCAAAAGGTCATTTGGCAATGGCTTCCTTTCAAAAATTCTGCTCGCAAAGATGATCTTCAGCTTTACCATTGGGTTCAGGCTTTAAATGGTGTTCCACCAACAGAGGACTATTCTTTTGCCAAGTATAACAAGTCTGTTGACATAACAAGATACACAGACGAGGAGTATGAGAAATATTTGGCAAATCCTAAATGGACCAAGGAGGAAACGGATCAGTTGTTTGAGTTGTGTGAGAGATTTAATCTCCGATTTATTGTTATAGCTGATAGATTTCCCTCATCTCGATCTGTTGAAGAATTAAAGGATCGATACTATAGTGTTTCCCGGGCAATATTAATTGCTAGGAGTCCATCTTCTGGGGATGTTGCAGGGCATCCACTTGTTAAGGAACCATATAACGTTTCACACGAGATGGAACAGAAAAGAGCCATGTCCCTGGTGCTCTCTCAAACAAGGCAACAAGAGCGAAGAGATGAAGAGGTGCTTGCCGAAGCAAAAAGAATTGCTGAATTACGCTTAATGACCAAGATTGCTGAAGAGGCTGAGTTGGTTGTTACTTCAAATGCTGGAGAAGACGTTACAGAGAGGCTCGATCCCAGCGAAACTGTATCTCCATCAAATATGCAACTCCCACCGATAGTTGTGCCCTCCACAATAACAGCAGATAATGCATCTACTGTAGCTTCTCTCTGCATGCTTCATGTGTATTTAAGAACCTACGCACTTGAACAAATGGTGCAATCTGCAAGCTCATCAGCTGGACTTCGGACTATCAAACGTGTTGATCAAACATTGCAGGAACTTGGGGTCAATTTGAAACCAAGGGTTCCAACAAAAGCTGTTTGTGCAGAGCATCTTGAACTAAGAAATGAAATACTAACTCTGCTGAATCTTCAAAAACAGCTGCAAAATAAGGAGGCTGAAGGTTCCTCTTTTCGTGATGGGTCACATTGTGAAACAACAGGAACACCAAAGCGTTCACATCATGGTGGAGATCAGGATCAGACATTTGTTCCAGATAACACAAGTTCTGGAGGGGAAAGAATTGGTAAAAGGGATCAAAAGCGCAAGGCATCTGGACATTATTCAGAAGTTCCGTCATCACCGGCCCAATCGAAAAGACAGAAAAAACTATAG 1317 0.4214 MDVKDILRLPQISFPVQEKNSQSQRKPDAISQEVYALTGGLTPLIPAVDLSLLNKRPPTNQKVIWQWLPFKNSARKDDLQLYHWVQALNGVPPTEDYSFAKYNKSVDITRYTDEEYEKYLANPKWTKEETDQLFELCERFNLRFIVIADRFPSSRSVEELKDRYYSVSRAILIARSPSSGDVAGHPLVKEPYNVSHEMEQKRAMSLVLSQTRQQERRDEEVLAEAKRIAELRLMTKIAEEAELVVTSNAGEDVTERLDPSETVSPSNMQLPPIVVPSTITADNASTVASLCMLHVYLRTYALEQMVQSASSSAGLRTIKRVDQTLQELGVNLKPRVPTKAVCAEHLELRNEILTLLNLQKQLQNKEAEGSSFRDGSHCETTGTPKRSHHGGDQDQTFVPDNTSSGGERIGKRDQKRKASGHYSEVPSSPAQSKRQKKL 438
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre2g04219 438 SUPERFAMILY Homeodomain-like 122 170 IPR009057 -
Trre2g04219 438 MobiDBLite consensus disorder prediction 379 393 - -
Trre2g04219 438 MobiDBLite consensus disorder prediction 366 438 - -
Trre2g04219 438 SMART sant 121 170 IPR001005 -
Trre2g04219 438 Pfam SANT/Myb-like domain of DAMP1 97 171 IPR032563 -
Trre2g04219 438 CDD SANT_DMAP1_like 125 167 - -
Trre2g04219 438 FunFam DNA methyltransferase 1-associated protein 1 93 180 - -
Trre2g04219 438 Coils Coil 348 368 - -
Trre2g04219 438 Gene3D - 93 180 - -
Trre2g04219 438 MobiDBLite consensus disorder prediction 406 420 - -
Trre2g04219 438 PANTHER DNA METHYLTRANSFERASE 1-ASSOCIATED PROTEIN 1 FAMILY MEMBER 1 424 IPR027109 GO:0006281|GO:0006338|GO:0035267|GO:0043967|GO:0043968
Trre2g04219 438 Pfam DNA methyltransferase 1-associated protein 1 (DMAP1) 311 374 IPR008468 GO:0005634|GO:0045892
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre2g04219 Trre-Chr2 49649560 49656902 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Trre2g04219 DMAP1 4.3e-07 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre2g04219 K11324 - cave:132170322 643.654