Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre2g04215 ATGAAGAGTTACCAAAAAAAGACCATATTGGAAAAGAAATATCGGAATGTGAGTGCCATTGGGCAGGGTCTTGATTTGAAGCTGAGGCAAGCTGAGAGTAAGAAAATTAGAGTGACTGTTAGCCAAAATGGTGCTGCTGATTTTAAGAGCATTACAGAAGCTATTAATAGCATTTCACCACACAATACTAGAAGAGTTATTTTGTTGATTGCGCCCGGTGTTTATAGGGAGAAAGTTGTGATCCCCAAAACATTGCCTTTCATAACATTCTTAGGGGATGCAAGGGATCTACCAACTATTACTGGAAATGATACAGCGTCTGTTACGGGAAGCGATGGTTCTCTATTGAGGACGTTCAATAGTGCGACCGTTGCTGTGAATGCTAGCTATTTTATAGCCATCAACATTAAATTTGAGAACACTGCTTATATTCCCATTGGATCAGAAGTAGACCAAGCTGTTGCGCTTCGCGTCACCGGAACCAAAGCTGCTTTTTACAATTGCTCCTTTTATGGGGTTCAAGACACATTATATGATCACAAAGGCCTTCACTACTTCAAAAATTGCTTTATTCAAGGCTCGGTTGATTTCATCTTCGGCTATGGAAGGTCCCTTTATGAGGGTTGCACTATAAACTCCATAACCAAGAACATGACCTCCATCACAGCTCAAAAGCGTTCGAGTTCATCATTAGATAGTGGATTTTCCTTTAAAAATAGCACAGTAACAGGTAGTGGACAAGTTTACCTTGGAAGACCATGGGGAGATTATTCGAGAGTCGTTTTCTCTTACACTTTCATGGACAAGATTGTTCTCCCCAAAGGATGGAAAGATTGGGAAGACCAAAAGCGCTTCATGAATGTATATTATGGAGAATACAAGTGTAGTGGGCCTGGATCCAACTTCACCGGAAGAGTTCCATGGGCACGGATACTAACGGACGAAGAGGCCCAACCTTTTATTGGAATCCATTTCATTGAAGGGGAGACTTGGCTTATTATTAGCCCTTAA 1011 0.4125 MKSYQKKTILEKKYRNVSAIGQGLDLKLRQAESKKIRVTVSQNGAADFKSITEAINSISPHNTRRVILLIAPGVYREKVVIPKTLPFITFLGDARDLPTITGNDTASVTGSDGSLLRTFNSATVAVNASYFIAINIKFENTAYIPIGSEVDQAVALRVTGTKAAFYNCSFYGVQDTLYDHKGLHYFKNCFIQGSVDFIFGYGRSLYEGCTINSITKNMTSITAQKRSSSSLDSGFSFKNSTVTGSGQVYLGRPWGDYSRVVFSYTFMDKIVLPKGWKDWEDQKRFMNVYYGEYKCSGPGSNFTGRVPWARILTDEEAQPFIGIHFIEGETWLIISP 336
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre2g04215 336 FunFam Pectinesterase 33 334 - -
Trre2g04215 336 Gene3D - 32 334 IPR012334 -
Trre2g04215 336 Pfam Pectinesterase 38 328 IPR000070 GO:0030599|GO:0042545
Trre2g04215 336 SUPERFAMILY Pectin lyase-like 36 332 IPR011050 -
Trre2g04215 336 PANTHER ACYL-COA THIOESTER HYDROLASE YBHC-RELATED 29 332 - -
Trre2g04215 336 ProSitePatterns Pectinesterase signature 2. 191 200 IPR033131 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre2g04215 Trre-Chr2 49557735 49564954 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre2g04215 38 332 Carbohydrate Esterase AT5G47500 47.475 1.21e-96 289
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre2g04215 K01051 - qsu:112011696 486.493