Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre2g04214 ATGGATACCAATTACAAAACCAATATTCATGTAATGAGGAGTTTATCAGATCGTGGTTCATCAGAAGCAAATGTAAGTGAAGAAGATATTATGGTGATAAAGAAAGGTCCATGGACAGAGGATGAAGATGCTATTCTGATGAACTATGTGGCTGTTCACGGCGAAGGTCACTGGAACTCGGTCGCTCGTTGTTCGGGTCTAAAGCGAACTGGGAAAAGTTGTAGACTAAGATGGTTGAACTACTTACGTCCGAATGTTCGACGTGGGAATATCACTCTTCAAGAACAGATCTTGATTCTTGATCTCCATTCGCGTTGGGGCAACCGGTGGTCTAAAATAGCGGAACAATTGCCAGGAAGAACAGACAATGAGATAAAGAACTACTGGAGGACGAGAGTGGTGAAGCAAGCTAGACAACTCAAATGTGATGTAAACAGCAAACAGTTTAGGGACATGTTGCGTTATGAATGGATTCCACGTCTCATTGAAAGGATTCAATCTACTTGCGCAACTGCAGATACTAATTCCTACAGCCAAACACAAACCACCAATTGCAATAATACTAATGCTCATAGTGACACTTGTGTTGCAAATCCTCCCATGTTGTCGTCTGACGTTTCATCGTACTCCTCAGAGGTTGATGTTTTAGTCGAATCAAACGTATCTAATAATTACAATTTAATAGATAGTGCGGAATTCGGATCCACGTGGCAGGAGTGGAATTGCTTAGACTCAAACATACAAGGATTTGAACAGAACAATGGTTTTTTTGGTGGTTCAGATTTATGGACAGATGAAAACATATGGTTCTTGCAGCAACAACTTGCAGATGATTTATGA 840 0.4071 MDTNYKTNIHVMRSLSDRGSSEANVSEEDIMVIKKGPWTEDEDAILMNYVAVHGEGHWNSVARCSGLKRTGKSCRLRWLNYLRPNVRRGNITLQEQILILDLHSRWGNRWSKIAEQLPGRTDNEIKNYWRTRVVKQARQLKCDVNSKQFRDMLRYEWIPRLIERIQSTCATADTNSYSQTQTTNCNNTNAHSDTCVANPPMLSSDVSSYSSEVDVLVESNVSNNYNLIDSAEFGSTWQEWNCLDSNIQGFEQNNGFFGGSDLWTDENIWFLQQQLADDL 279
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre2g04214 279 ProSiteProfiles Myb-like domain profile. 34 82 IPR001005 -
Trre2g04214 279 Gene3D - 92 133 - -
Trre2g04214 279 ProSiteProfiles Myb-like domain profile. 83 133 IPR001005 -
Trre2g04214 279 SMART sant 34 84 IPR001005 -
Trre2g04214 279 SMART sant 87 135 IPR001005 -
Trre2g04214 279 CDD SANT 92 131 IPR001005 -
Trre2g04214 279 Gene3D - 32 88 - -
Trre2g04214 279 PANTHER MYB TRANSCRIPTION FACTOR-RELATED-RELATED 33 223 IPR044676 GO:0003700|GO:0006355|GO:0043565
Trre2g04214 279 FunFam MYB transcription factor 92 155 - -
Trre2g04214 279 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 87 137 IPR017930 -
Trre2g04214 279 Pfam Myb-like DNA-binding domain 88 131 IPR001005 -
Trre2g04214 279 Pfam Myb-like DNA-binding domain 35 82 IPR001005 -
Trre2g04214 279 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 30 86 IPR017930 -
Trre2g04214 279 FunFam Myb transcription factor 35 87 - -
Trre2g04214 279 SUPERFAMILY Homeodomain-like 33 129 IPR009057 -
Trre2g04214 279 CDD SANT 37 82 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre2g04214 Trre-Chr2 49552554 49553615 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre2g04214 17 278 MYB Transcription Factor Family AT2G47190 48.029 2.92e-80 242
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Trre2g04214 Myb_DNA-binding 1.5e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre2g04214 K09422 - gmx:778040 324.324