Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre2g04213 ATGAGAGGTATGGATATTAAGATTAAGAAAATTGATGAGTCTGCAAAGCTCAATGAATTAAGAAAAGGTCCATGGACGTTAGAAGAGGACACCATTTTGGTTAATTACATTTCAACCCATGGTGAAGGTCACTGGAATACTGTGGCATGTTCTGCAGGTCTTCGGAGAAGTGGAAAGAGTTGCAGATTAAGGTGGTTAAATTACTTGCGTCCGGATTTACGCCGTGGAAATATCACACTCCAAGAACAGATTTTGATTCTTGACCTCCATTCTCGCTGGGGCAATAGGTGGTCGAGAATTGCGCAACATCTACCAGGAAGAACAGACAATGAAATAAAAAACTATTGGAGGACAAGAGTGATCAAGCAGGCAAAGCAGCTTAAGTGTGATGTCAACAGCAAACAGTTTAGAGATGTCTTGCGCTACGTCTGGATGCCCCGTTTGCTCGAACAGGTTCAACCTGTACCCCAAGTCCCTGACCCGAATAAACTGAACCGACCAAATTTCACTCTTCACCAATACACATTGCACAATTCAGTTTCAGAAACAGAGCCGCCAAAATCAAACAACTCTTCAACTGCTAGTCCTATTTCCTCGAACTCGTCATCAGTTGAATTTCAAGTTCCTAGGAATTCGGAGCTGTTGGGTAATTATGGCTCGAAACTATTATCAAGTTTCAATAACCAGGATTCAGAACAGGGGAATAGTAGTGGTGGTGGTGACTCGTTGGAGAATTTGTGGAACGATGATGAGAACATTTGGTTTTTGCAACAGCTTTCTGAAGATCTTGAAATAAAATACAATTACCTTGTGTGA 816 0.4167 MRGMDIKIKKIDESAKLNELRKGPWTLEEDTILVNYISTHGEGHWNTVACSAGLRRSGKSCRLRWLNYLRPDLRRGNITLQEQILILDLHSRWGNRWSRIAQHLPGRTDNEIKNYWRTRVIKQAKQLKCDVNSKQFRDVLRYVWMPRLLEQVQPVPQVPDPNKLNRPNFTLHQYTLHNSVSETEPPKSNNSSTASPISSNSSSVEFQVPRNSELLGNYGSKLLSSFNNQDSEQGNSSGGGDSLENLWNDDENIWFLQQLSEDLEIKYNYLV 271
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre2g04213 271 PANTHER MYB TRANSCRIPTION FACTOR-RELATED-RELATED 18 212 IPR044676 GO:0003700|GO:0006355|GO:0043565
Trre2g04213 271 SUPERFAMILY Homeodomain-like 20 116 IPR009057 -
Trre2g04213 271 SMART sant 21 71 IPR001005 -
Trre2g04213 271 SMART sant 74 122 IPR001005 -
Trre2g04213 271 Pfam Myb-like DNA-binding domain 75 118 IPR001005 -
Trre2g04213 271 Pfam Myb-like DNA-binding domain 22 69 IPR001005 -
Trre2g04213 271 CDD SANT 24 69 IPR001005 -
Trre2g04213 271 Gene3D - 22 74 - -
Trre2g04213 271 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 17 69 IPR017930 -
Trre2g04213 271 MobiDBLite consensus disorder prediction 179 204 - -
Trre2g04213 271 ProSiteProfiles Myb-like domain profile. 17 69 IPR001005 -
Trre2g04213 271 FunFam Myb transcription factor 22 74 - -
Trre2g04213 271 Gene3D - 79 120 - -
Trre2g04213 271 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 70 124 IPR017930 -
Trre2g04213 271 ProSiteProfiles Myb-like domain profile. 70 120 IPR001005 -
Trre2g04213 271 CDD SANT 79 118 IPR001005 -
Trre2g04213 271 FunFam MYB transcription factor 79 142 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre2g04213 Trre-Chr2 49510478 49511618 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre2g04213 18 269 MYB Transcription Factor Family AT2G47190 47.940 9.44e-77 233
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Trre2g04213 Myb_DNA-binding 2.6e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre2g04213 K09422 - gmx:778065 296.204