Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre2g04212 ATGTTCCACAAGGAAGCTGCACTAATCTTTCCATCCATGCCTATTTTGATTCTTGATCTCCACTCTCGTTGGGGCAATAGGTGGTCGAGAATTGCACAACATCTTCCCGGAAGAACAGACAACGAAATAAAAAACTATTGGAGGACTAGAGTGATGAAGCAGGCAAAGCAGCTCAAGTGTGATGTCAATAGCAAACAATTTAGAGATGTCTTGCGCAACGTCTGGATGCCCCGTTTGCTCGAACAGGTTCAAACTGTACCCCAAATCCCTGACCCGAATAACCTGAAACGACCAAATTTCATTCTTCACCAAAAGACGTTGCACAGTTCAGTTTCGGAAACAGAGTGGCCAAAATCAAACAACTCCTCAAGTGCTAGTCCTATTTCCTCGAACTCGTCATCAGTTGAATTTCAAGTTCCTTCGAATTCGGAGCTGTTGGGCCATGATGGCTCGAAACTATTATTAAGTTTTAATAACCAGGATTCAGAACAGGGGAATAGTAGTGGTGGTGGTGACTCGTTGGAGAATTTGTGGAACAATGATGAGAACATGTGGTTTTTGCAACAACTTTCTGAAGATTTTGAAATAAAATACAATCACCTTGTGTGA 609 0.422 MFHKEAALIFPSMPILILDLHSRWGNRWSRIAQHLPGRTDNEIKNYWRTRVMKQAKQLKCDVNSKQFRDVLRNVWMPRLLEQVQTVPQIPDPNNLKRPNFILHQKTLHSSVSETEWPKSNNSSSASPISSNSSSVEFQVPSNSELLGHDGSKLLLSFNNQDSEQGNSSGGGDSLENLWNNDENMWFLQQLSEDFEIKYNHLV 202
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre2g04212 202 SMART sant 9 53 IPR001005 -
Trre2g04212 202 SUPERFAMILY Homeodomain-like 16 56 IPR009057 -
Trre2g04212 202 PANTHER MYB TRANSCRIPTION FACTOR-RELATED-RELATED 15 141 IPR044676 GO:0003700|GO:0006355|GO:0043565
Trre2g04212 202 MobiDBLite consensus disorder prediction 112 135 - -
Trre2g04212 202 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 16 55 IPR017930 -
Trre2g04212 202 FunFam MYB transcription factor 12 73 - -
Trre2g04212 202 CDD SANT 16 49 IPR001005 -
Trre2g04212 202 Gene3D - 14 75 - -
Trre2g04212 202 ProSiteProfiles Myb-like domain profile. 17 51 IPR001005 -
Trre2g04212 202 Pfam Myb-like DNA-binding domain 16 49 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre2g04212 Trre-Chr2 49444907 49445994 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre2g04212 15 188 MYB Transcription Factor Family AT2G47190 41.885 1.50e-37 129
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Trre2g04212 Myb_DNA-binding 6e-11 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre2g04212 K09422 - gmx:778065 173.326