Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre2g04210 ATGGCTACGGCCGCCGCCACCGCAATGCAGTGGCCAACTCAGTGGACTCGTGAAGACGTCAAGATTTTCGAGAGAGCTCTTGTGATGGTGCCAGAGGATTTACCTAACCGGTGGGAGAAGATTGCCGAACAAGTTACCGGTAAGTCAGCGGCGGAAGTGAGTCACTATGAGAATTTGGTTCATGAAATTTTGGAAATTCAATCTGGTCGGATTGATGTTCCAAATTATCCTGATGACTTGGTTGTGAATGGTGGCCGTGGATCCTCTTATTCAGATTCTTCGAAGAAGACTAGACATGCTGATAAGGAGAAGAGGGAGGAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAAGGAAGATCATGGACCGAAGATGAGCATAAATTGTTTCTTGCTGGGCTTGAGAAACACGAGAAAGGAGATTGGAGAAGCATTTCAATAAATTTTGTTGTGACGAGAACACCAACTCAGGTAGCAAGTCATGCTCAGAAGTACTTTAGTCACAACCAGCGAAAAAGTGCAGTGAAGAATAAAAAGAGGACAAGATCAAGTATTCATGACATTACGTTGGGAGATAGTAACTCAGCTCCAATGCCTATTGATCAGAACTTTGTTCCTTCTCCCGGTGTTGGTTCAATATTGCAACAACATCAAGGGATGCATTATTATTATCCCTCAAACAGTTTACAAGATCAAATGTGTTTATTTGGACATTCAAACTATGGATTTTAA 780 0.4154 MATAAATAMQWPTQWTREDVKIFERALVMVPEDLPNRWEKIAEQVTGKSAAEVSHYENLVHEILEIQSGRIDVPNYPDDLVVNGGRGSSYSDSSKKTRHADKEKREEKKKKKKKKKKKKKKKKKKKKKKKKKKKGRSWTEDEHKLFLAGLEKHEKGDWRSISINFVVTRTPTQVASHAQKYFSHNQRKSAVKNKKRTRSSIHDITLGDSNSAPMPIDQNFVPSPGVGSILQQHQGMHYYYPSNSLQDQMCLFGHSNYGF 259
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre2g04210 259 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 130 186 IPR017930 -
Trre2g04210 259 CDD SANT 137 182 IPR001005 -
Trre2g04210 259 NCBIfam myb-like DNA-binding domain, SHAQKYF class 133 184 IPR006447 GO:0003677
Trre2g04210 259 SMART sant 134 184 IPR001005 -
Trre2g04210 259 SMART sant 11 62 IPR001005 -
Trre2g04210 259 Coils Coil 100 134 - -
Trre2g04210 259 FunFam transcription factor MYB1R1 136 187 - -
Trre2g04210 259 Gene3D - 136 187 - -
Trre2g04210 259 MobiDBLite consensus disorder prediction 82 140 - -
Trre2g04210 259 CDD SANT 15 60 IPR001005 -
Trre2g04210 259 PANTHER DUPLICATED HOMEODOMAIN-LIKE SUPERFAMILY PROTEIN-RELATED 13 239 IPR043363 -
Trre2g04210 259 ProSiteProfiles SANT domain profile. 133 186 IPR017884 -
Trre2g04210 259 FunFam Transcription factor SRM1 7 73 - -
Trre2g04210 259 ProSiteProfiles Myb-like domain profile. 130 182 IPR001005 -
Trre2g04210 259 Gene3D - 13 62 - -
Trre2g04210 259 MobiDBLite consensus disorder prediction 105 134 - -
Trre2g04210 259 Pfam Myb-like DNA-binding domain 137 182 IPR001005 -
Trre2g04210 259 SUPERFAMILY Homeodomain-like 131 186 IPR009057 -
Trre2g04210 259 SUPERFAMILY Homeodomain-like 13 61 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre2g04210 Trre-Chr2 49416717 49417667 Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Trre2g04210 Myb_DNA-binding 9.3e-11 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre2g04210 - - gmx:548010 250.751