Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre2g04209 ATGAATCACAAGACAATCACTATGGCTACGGCCGCCGCCACCGCAATGCAGTGGCCAACTCAGTGGACTCGTGAAGACGTCAAGATTTTCGAGAGAGCTCTTGTGATGGTGCCAGAGGATTTACCTAACCGGTGGGAGAAGATTGCCGAACAAGTTACCGGTAAGTCAGCGGCGGAAGTGAGTCACTATGAGAATTTGGTTCATGAAATTTTGGAAATTCAATCTGGTCGGATTGATGTTCCAAATTATCCTGATGACTTGGTTGTGAATGGTGGCCGTGGATCCTCTTATTCAGATTCTTCGAAGAAGACTAGACATGCTGATAAGGAGAAGAGGGAGGAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAAGGAAGATCATGGACCGAAGATGAGCATAAATTGTTTCTTGCTGGGCTTGAGAAACACGAGAAAGGAGATTGGAGAAGCATTTCAATAAATTTTGTTGTGACGAGAACACCAACTCAGGTAGCAAGTCATGCTCAGAAGTACTTTAGTCACAACCAGCGAAAAAGTGCAGTGAAGAATAAAAAGAGGACAAGATCAAGTATTCATGACATTACGTTGGGAGATAGTAACTCAGCTCCAATGCCTATTGATCAGAACTTTGTTCCTTCTCCCGGTGTTGGTTCAATATTGCAACAACATCAAGGGATGCATTATTATTATCCCTCAAACAGTTTACAAGATCAAATGTGTTTATTTGGACATTCAAACTATGGATTTTAA 801 0.4132 MNHKTITMATAAATAMQWPTQWTREDVKIFERALVMVPEDLPNRWEKIAEQVTGKSAAEVSHYENLVHEILEIQSGRIDVPNYPDDLVVNGGRGSSYSDSSKKTRHADKEKREEKKKKKKKKKKKKKKKKKKKKKKKKKKKGRSWTEDEHKLFLAGLEKHEKGDWRSISINFVVTRTPTQVASHAQKYFSHNQRKSAVKNKKRTRSSIHDITLGDSNSAPMPIDQNFVPSPGVGSILQQHQGMHYYYPSNSLQDQMCLFGHSNYGF 266
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre2g04209 266 MobiDBLite consensus disorder prediction 89 147 - -
Trre2g04209 266 SMART sant 18 69 IPR001005 -
Trre2g04209 266 SMART sant 141 191 IPR001005 -
Trre2g04209 266 NCBIfam myb-like DNA-binding domain, SHAQKYF class 140 191 IPR006447 GO:0003677
Trre2g04209 266 ProSiteProfiles SANT domain profile. 140 193 IPR017884 -
Trre2g04209 266 Coils Coil 107 141 - -
Trre2g04209 266 Gene3D - 20 69 - -
Trre2g04209 266 Pfam Myb-like DNA-binding domain 144 189 IPR001005 -
Trre2g04209 266 MobiDBLite consensus disorder prediction 112 141 - -
Trre2g04209 266 ProSiteProfiles Myb-like domain profile. 137 189 IPR001005 -
Trre2g04209 266 CDD SANT 22 67 IPR001005 -
Trre2g04209 266 FunFam transcription factor MYB1R1 143 194 - -
Trre2g04209 266 CDD SANT 144 189 IPR001005 -
Trre2g04209 266 SUPERFAMILY Homeodomain-like 138 193 IPR009057 -
Trre2g04209 266 Gene3D - 143 194 - -
Trre2g04209 266 SUPERFAMILY Homeodomain-like 20 68 IPR009057 -
Trre2g04209 266 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 137 193 IPR017930 -
Trre2g04209 266 PANTHER DUPLICATED HOMEODOMAIN-LIKE SUPERFAMILY PROTEIN-RELATED 20 246 IPR043363 -
Trre2g04209 266 FunFam Transcription factor SRM1 14 80 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre2g04209 Trre-Chr2 49416717 49417688 Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Trre2g04209 Myb_DNA-binding 9.7e-11 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre2g04209 - - gmx:548010 250.751