Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre2g04195 ATGGTTTCTGCTGCTGCTGCTGATAAGTTACCGGATGAGATTCTCGGCATGAAAATTAAGGATGATAAGGAAATGGAAGCACATGTGGTAGATGGAAATAGTACTGAAGCAGGACATGTAATTGTCACTACCATTGGTGGTAAAAATGGCCAACCAAAGCAGACAATAAGCTACATGGCTGAGCGTGCTGTTGGACAGGGATCATTTGGTGTAGTTTTCCAGGCAAAGTGCTTGGAGACAGGTGAAACTGTGGCTATAAAGAAGGTTCTTCAAGACAAGAGGTACAAGAACCGGGAATTGCAAACAATGCGCCTTCTTGACCACCCTAATGTTGTAACTTTGAAGCATTGTTTCTTTTCGACAACTGAAAAAGATGAGCTCTATCTTAACTTGGTACTTGAGTACGTCCCTGAGACTGTCCATCGCGTGATCAGACACTACACCAAAATGAATCAGAGGATGCCAATGATATATGTAAAACTTTATTCTTACCAGATATGTAGATCACTAGCTTACATTCATAACTGTGTTGGAGTGTCTCATAGAGACATAAAACCTCAAAATTTACTGGTCAATCCTCACACCCACCAGCTGAAGCTTTGTGACTTTGGGAGTGCAAAAGTCCTGGTCAAAGGCGAACCAAACATATCTTACATTTGTTCTAGGTATTATAGAGCTCCTGAGCTTATATTTGGTGCAACTGAGTACACCACAGCCATCGACATTTGGTCAGCTGGTTGTGTACTTGGCGAACTATTGCTCGGCCAGCCTCTCTTTCCCGGTGCAAGCGGAGTAGATCAGCTTGTTGAAATTATCAAGGTTTTAGGTACCCCAACAAGGGAAGAAATAAAATGTATGAATCCTAATTACACCGAATTCAAATTCCCCCAAATCAAAGCTCATCCATGGCACAAGATCTTTCGCAAGCGTATGCCACCAGAAGCTGTGGATCTCGTCTCAAGATTACTGCAATACTCTCCAAATCTTCGATGCACAGCCTTGGAGGCCATGGTTCATCCATTCTTTGATGAATTGCGTGATCCAAACACCCGCTTACCTAATGGGCGTCATCTTCCTCCTTTATTTAACTTCAAAGCCAATGAGCTTAAGGGAGTGCCTGCTGAAATGCTGGTGAAGTTGATTCCGTCTCACGCGAGAAAGCAAAGTCCCTTGTTTGTTTCGTAG 1185 0.4312 MVSAAAADKLPDEILGMKIKDDKEMEAHVVDGNSTEAGHVIVTTIGGKNGQPKQTISYMAERAVGQGSFGVVFQAKCLETGETVAIKKVLQDKRYKNRELQTMRLLDHPNVVTLKHCFFSTTEKDELYLNLVLEYVPETVHRVIRHYTKMNQRMPMIYVKLYSYQICRSLAYIHNCVGVSHRDIKPQNLLVNPHTHQLKLCDFGSAKVLVKGEPNISYICSRYYRAPELIFGATEYTTAIDIWSAGCVLGELLLGQPLFPGASGVDQLVEIIKVLGTPTREEIKCMNPNYTEFKFPQIKAHPWHKIFRKRMPPEAVDLVSRLLQYSPNLRCTALEAMVHPFFDELRDPNTRLPNGRHLPPLFNFKANELKGVPAEMLVKLIPSHARKQSPLFVS 394
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre2g04195 394 Gene3D Transferase(Phosphotransferase) domain 1 138 386 - -
Trre2g04195 394 PANTHER GLYCOGEN SYNTHASE KINASE-3 ALPHA 22 388 - -
Trre2g04195 394 FunFam Shaggy-related protein kinase kappa 138 386 - -
Trre2g04195 394 ProSiteProfiles Protein kinase domain profile. 58 342 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre2g04195 394 SUPERFAMILY Protein kinase-like (PK-like) 57 366 IPR011009 -
Trre2g04195 394 Pfam Protein kinase domain 58 342 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre2g04195 394 Gene3D Phosphorylase Kinase; domain 1 42 137 - -
Trre2g04195 394 ProSitePatterns Serine/Threonine protein kinases active-site signature. 179 191 IPR008271 GO:0004672|GO:0006468
Trre2g04195 394 CDD STKc_GSK3 53 345 IPR039192 -
Trre2g04195 394 ProSitePatterns Protein kinases ATP-binding region signature. 64 88 IPR017441 GO:0005524
Trre2g04195 394 FunFam Glycogen synthase kinase-3 beta 42 137 - -
Trre2g04195 394 SMART serkin_6 58 342 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre2g04195 Trre-Chr2 49324727 49327361 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre2g04195 64 350 Core Cell Cycle Gene Families AT1G76540 34.576 1.25e-55 184
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_GSK Trre2g04195 Pkinase 4.8e-64 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre2g04195 K00924 - gmx:100788046 748.814