Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre2g04194 ATGATGGCAACTGCGGGTGTAGCACCTGCTTCTGGATTGATAGATAAGAATTATGTGACTATGGTTTCTGCTGCTGCTGCTGATAAGTTACCGGATGAGATTCTCGGCATGAAAATTAAGGATGATAAGGAAATGGAAGCACATGTGGTAGATGGAAATAGTACTGAAGCAGGACATGTAATTGTCACTACCATTGGTGGTAAAAATGGCCAACCAAAGCAGACAATAAGCTACATGGCTGAGCGTGCTGTTGGACAGGGATCATTTGGTGTAGTTTTCCAGGCAAAGTGCTTGGAGACAGGTGAAACTGTGGCTATAAAGAAGGTTCTTCAAGACAAGAGGTACAAGAACCGGGAATTGCAAACAATGCGCCTTCTTGACCACCCTAATGTTGTAACTTTGAAGCATTGTTTCTTTTCGACAACTGAAAAAGATGAGCTCTATCTTAACTTGGTACTTGAGTACGTCCCTGAGACTGTCCATCGCGTGATCAGACACTACACCAAAATGAATCAGAGGATGCCAATGATATATGTAAAACTTTATTCTTACCAGATATGTAGATCACTAGCTTACATTCATAACTGTGTTGGAGTGTCTCATAGAGACATAAAACCTCAAAATTTACTGGTCAATCCTCACACCCACCAGCTGAAGCTTTGTGACTTTGGGAGTGCAAAAGTCCTGGTCAAAGGCGAACCAAACATATCTTACATTTGTTCTAGGTATTATAGAGCTCCTGAGCTTATATTTGGTGCAACTGAGTACACCACAGCCATCGACATTTGGTCAGCTGGTTGTGTACTTGGCGAACTATTGCTCGGCCAGCCTCTCTTTCCCGGTGCAAGCGGAGTAGATCAGCTTGTTGAAATTATCAAGGTTTTAGGTACCCCAACAAGGGAAGAAATAAAATGTATGAATCCTAATTACACCGAATTCAAATTCCCCCAAATCAAAGCTCATCCATGGCACAAGATCTTTCGCAAGCGTATGCCACCAGAAGCTGTGGATCTCGTCTCAAGATTACTGCAATACTCTCCAAATCTTCGATGCACAGCCTTGGAGGCCATGGTTCATCCATTCTTTGATGAATTGCGTGATCCAAACACCCGCTTACCTAATGGGCGTCATCTTCCTCCTTTATTTAACTTCAAAGCCAATGAGCTTAAGGGAGTGCCTGCTGAAATGCTGGTGAAGTTGATTCCGTCTCACGCGAGAAAGCAAAGTCCCTTGTTTGTTTCGTAG 1245 0.4313 MMATAGVAPASGLIDKNYVTMVSAAAADKLPDEILGMKIKDDKEMEAHVVDGNSTEAGHVIVTTIGGKNGQPKQTISYMAERAVGQGSFGVVFQAKCLETGETVAIKKVLQDKRYKNRELQTMRLLDHPNVVTLKHCFFSTTEKDELYLNLVLEYVPETVHRVIRHYTKMNQRMPMIYVKLYSYQICRSLAYIHNCVGVSHRDIKPQNLLVNPHTHQLKLCDFGSAKVLVKGEPNISYICSRYYRAPELIFGATEYTTAIDIWSAGCVLGELLLGQPLFPGASGVDQLVEIIKVLGTPTREEIKCMNPNYTEFKFPQIKAHPWHKIFRKRMPPEAVDLVSRLLQYSPNLRCTALEAMVHPFFDELRDPNTRLPNGRHLPPLFNFKANELKGVPAEMLVKLIPSHARKQSPLFVS 414
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre2g04194 414 PANTHER GLYCOGEN SYNTHASE KINASE-3 ALPHA 42 408 - -
Trre2g04194 414 SUPERFAMILY Protein kinase-like (PK-like) 77 386 IPR011009 -
Trre2g04194 414 ProSitePatterns Protein kinases ATP-binding region signature. 84 108 IPR017441 GO:0005524
Trre2g04194 414 FunFam Glycogen synthase kinase-3 beta 62 157 - -
Trre2g04194 414 FunFam Shaggy-related protein kinase kappa 158 406 - -
Trre2g04194 414 Gene3D Transferase(Phosphotransferase) domain 1 158 406 - -
Trre2g04194 414 Gene3D Phosphorylase Kinase; domain 1 62 157 - -
Trre2g04194 414 ProSiteProfiles Protein kinase domain profile. 78 362 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre2g04194 414 Pfam Protein kinase domain 78 362 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre2g04194 414 SMART serkin_6 78 362 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre2g04194 414 ProSitePatterns Serine/Threonine protein kinases active-site signature. 199 211 IPR008271 GO:0004672|GO:0006468
Trre2g04194 414 CDD STKc_GSK3 73 365 IPR039192 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre2g04194 Trre-Chr2 49324052 49327361 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre2g04194 84 370 Core Cell Cycle Gene Families AT1G76540 34.576 2.25e-55 184
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_GSK Trre2g04194 Pkinase 5.6e-64 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre2g04194 K00924 - gmx:100788046 764.992