Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre2g04187 ATGATCAGCATGAAAAACATTAGTCTTTTTACACTCTTGAGTTTCAATCGTGGACAAGCATGGCTCACTTTGTCACTTGTTATTATTACTCTTGTACAAATCTTACCGCTGGTGACCGGTCAACCACTAGGACCGGAAGATCCAACGGAGAACAACAAATCAGTAGCCACCATTATTGAAATTGTAGCCGTTATGATACTCTTCTCCGGTTTCCTTTCTCTATACTCATCCAAATGCGGTGATCGTCAACGAGGGGTTATTTTCGATCTCAGTTTACCTACCGGTGGAAATGGTCTCCGGGCACAAAACAATGAGCCAAGTAACGGCCTCAACCAAGATGTTATCGACACATTTCCAACTTTTCGTTACTCCAATGTGAAAGGACTCAAGATTGGAAAAAGCACTTTGGCTTGTGCTGTTTGCTTGAACGAGTTTCAAGACGATGAAACATTGCGTTTAATCCCTAAATGTAGCCATGTGTACCATCATGGTTGCATTGATATTTGGCTTGTTTCTCATAATACATGCCCTGTTTGTCGTGCTAACCTTGATCCAAGATCTGACGATACTATTGTTCCTCCAAGTACAATCATTCAGATACCAGAAGGAGAAATACATCATAATGAGGAAGTAGAACATGATATTCAAGAGGAACAAAAGAGAGACAACATTGAAGTGGAATATTCAACAAAGGTAAATTTACTTCGTAGGTCTCACACATATTGTGCATCAACACGATCAAGATCTACAGGATTCTTATCTGTTATGTTGTTATCACGATCAAATTCAACGGGTGTGTTGGTGCAACCAGGTGAGGATTGTGAGAGGTTTACATTGAGGTTACCTGATGAAGTACGACATCAAATGATGATTAATACAACAACGCATAAGCGTGCAAAAAGTTGTGTGAGTTTTACGAGAATGAGCAGTGGCACATGTGGTTATAGGTCAAAAAGTGTTGGGTGTGGAAGCGGGTGGTGTCACGTGAATTACGAAAGGTTTGGAAGTGAGGAGGAAGAGAACTTAGGGTTCGCAAGAAATAGTTGGAATAATAAATCCGTTAGAAAATCTCCGGTAAAGAGTTTGGAAGTTAATTTGGACAATTATGGAGGTGAGCAATCGTCTGATCTTTTGTTTCCCATGTAG 1146 0.4031 MISMKNISLFTLLSFNRGQAWLTLSLVIITLVQILPLVTGQPLGPEDPTENNKSVATIIEIVAVMILFSGFLSLYSSKCGDRQRGVIFDLSLPTGGNGLRAQNNEPSNGLNQDVIDTFPTFRYSNVKGLKIGKSTLACAVCLNEFQDDETLRLIPKCSHVYHHGCIDIWLVSHNTCPVCRANLDPRSDDTIVPPSTIIQIPEGEIHHNEEVEHDIQEEQKRDNIEVEYSTKVNLLRRSHTYCASTRSRSTGFLSVMLLSRSNSTGVLVQPGEDCERFTLRLPDEVRHQMMINTTTHKRAKSCVSFTRMSSGTCGYRSKSVGCGSGWCHVNYERFGSEEEENLGFARNSWNNKSVRKSPVKSLEVNLDNYGGEQSSDLLFPM 381
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre2g04187 381 FunFam E3 ubiquitin-protein ligase ATL6 99 186 - -
Trre2g04187 381 CDD RING-H2_EL5-like 138 180 - -
Trre2g04187 381 PANTHER E3 UBIQUITIN-PROTEIN LIGASE ATL42 45 302 - -
Trre2g04187 381 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 97 186 IPR013083 -
Trre2g04187 381 ProSiteProfiles Zinc finger RING-type profile. 138 180 IPR001841 -
Trre2g04187 381 SUPERFAMILY RING/U-box 132 186 - -
Trre2g04187 381 SMART ring_2 138 179 IPR001841 -
Trre2g04187 381 Pfam Ring finger domain 137 180 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre2g04187 Trre-Chr2 49282843 49283988 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre2g04187 22 290 Rapid Response to Elicitors AT3G05200 40.511 1.33e-50 172
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre2g04187 K10664 - gmx:100814384 342.813