Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre2g04186 ATGGAGGCTAGATTGGGTGGTGAAGGTTATCATTTTTATGGTGTTGGTGGTTCATCTGAATTAACTAGTATGGGAAAGAGGTCTAGAGAATGGAATTTGAATGATTGGAGATGGGATGGTGATTTGTTTTTAGCTAGCCGTGTGAATCCGGTGCCGGCGGAAGATATGAGAGTAGGTCAACAGTTTTTCCCTCTCGGGTCTGGGATCTCGGTGGCTGGGGGTTCGTCCAACACCTCTTCTTCATGCTCTGAAGAAGGAGATCTAGAGAATCATAAAAGAGATAAGGAAGGGGAGAAGAAAAGGAGAGTTATTGTGTTGGAAGATGATGGTTTGAATGAGGAAGCTGGTGCTCTTAGCTTAAATCTTGCTGGACATGCTTCGCCGGTGGTGGAAAGGGAGATTGCAACATGGGATGGTGTGAATGGGAAAAAAGGGAGAGTAGCTGGAGGTACTCCGAATCGAGCTGTTTGTCAGGTTGAAGACTGTGGTGCAGATCTGAGTAGAGGTAAGGATTATCACAGACGTCATAAGGTTTGTGAGATGCATTCGAAGGCTAGTAGGGCGCTCGTGGGAAATGCAATGCAGAGGTTTTGTCAACAGTGTAGTAGGTTTCACATACTTCAAGAGTTTGATGAAGGAAAGAGAAGCTGTCGGAGACGCTTGGCTGGCCATAATAAACGGAGAAGGAAAACAAACACTGAAGCTGTTCCTAATGGAAGTCCAACAAATGATGATCAGACTAGTAGTTATCTGTTGATAAGTTTGTTGAAGATACTTTCAAATATGCATTCTGACAGGTCAGATCAGATTACAGATCAGGATCTTCTAACTCATCTTCTAAGGAGTCTTGCTAGTCAGAATGATGAACAAGGGATCAGAAACCTTTCAAACCTTTTGCGGGAACAAGAGAATTTGTTGAGAGAAGGGGGTTCTTCTAGGAAGTCAGAGATGGTGTCAGCTTTATTCTCCAATGGTTCTCAAGGCTCTCCAACTGCTGTAACACAACATCAAACTGTATCTATGAATAGAATGCAGGAAGAAATGATGCATCCACATGATGTTAGGACCGCTGATCGTCAGCTCATATCTTCAGTAAAGCCCAGCATTTCAAACAGTCCACCGGCTTACTCAGAAGCCAGAGATAGTAGTGCACAAATAAAGATGAATAATTTTGATTTGAACGACATATATATTGACTCAGATGATGGCACGGATGATCTAGAAAGATTGCCCGTCTCTACAAATCTTGGCACTAGCTCTGTCGACTACCCATGGGCACAACAAGATTCTCATCAGTCAAGTCCACCTCAAACAAGTGGAAATTCAGATTCTGCATCTGCCCAGTCCCCTTCTAGTTCTAGCGGAGAAGCTCAGAGTCGCACAGACCGGATTGTTTTTAAACTCTTTGGTAAAGAGCCAAATGAATTTCCACTTGTACTTAAATCACAGATTCTTGATTGGTTATCCCACAGTCCTACCGATATGGAGAGCTACATACGGCCTGGTTGTATTGTTTTGACTATTTATCTGCGTCAGGCTGAGGCTGTGTGGGAGGATCTTTGCTGTGATCTGACTTCCAGTTTGAATAAGCTGCTGGATGTCTCTGATGATACGTTTTGGAGAACTGGATGGGTTCATATCAGGGTGCAGCATCAAATGGCATTCATTTTCGATGGTCAAGTTGTCATTGATACATCACTACCTTTTAGAAGTAACAATTATAGCAAAATTTGGACTGTCAGTCCAATTGCTGTACCAGCATCAAAGAGAGCTCAATTTTCTGTTAAAGGTGTCAACCTGATGCGCCCTGCCACGAGGTTAATGTGTGCTTTAGAAGGAAAATATCTGGTCTGTGAAGATACTCACGAGTCAACGGATGATTACTCCAAGGAGCTTGATGAACTTCAGTGCATCCGATTTTCATGTTCTGTCCCTGTGACGAATGGAAGAGGATTTATTGAGATTGAGGACCAGGGTTTGAGTAGCAGCTTCTTTCCTTTCATAGTTGCAGAAGAGGATGTTTGCTCAGAGATCTGTGTGCTTGAGCCTTTACTAGAATTAAGTGAAACTGATCCAGATATTGAAGGGACTGGAAAGATTAAAGATAAAAGTCAAGCTATGGATTTCATTCATGAAATGGGATGGCTTCTTCACAGAAGCGAATTGAAATATAGGATGGTTCACATGAACTCTGCTGTAGATCTCTTTCCATTAGAACGGTTCACATGGCTTATGGAGTTTTCCATGGACCATGATTGGTGTGCAGTGGTGAAAAAACTGTTGAACCTACTGCTCCATGAAACTGTGAATAAAGGAGATCACCCTACCCTGTATCAAGCACTTTCGGAGATGGGTCTCCTTCACCGAGCTGTAAGGAAAAATAGCAAGCAGTTAGTGGAGCTGCTTTTGAGATATGTTCCTGACAAGGCACTAGTTGATGGAGATAATCACAGCTTCTTGTTTAAACCTGATGCTGTTGGTCCTGCTGGTTTGACACCCCTCCATATAGCAGCGGGAAAAGATGGTTCCGAAGATGTACTAGAGGCTCTGACTAATGATCCTTGCATGGTGGGAATTGAAGCATGGAAGAGTGCCCGTGACAGCACAGGCTCCACACCCGAGGATTATGCACGATTACGTGGCCATTATACTTACATTCACTTAGTGCAGAAAAAAATTAACAAGAGACAAGGAGCACCTCATGTGGTGGTTGAGATTCCCAGCAATCCGACAGAGAGCAATACAAACCCGAAGCAAAATGAGTCGTCCACTAGCTTTGAGATTGGAAAAGCTGAAGTAAGACGCGGTCAAGGGAACTGTAAACTTTGTAATACTAAAATTTCTTGTAGAACTGCAGTAGGAAGGTCTACGGTATACAGACCTGCAATGCTCTCCATGGTGGCCATAGCAGCAGTCTGTGTTTGTGTGGCTCTTTTGTTTAAAAGCTCACCTGAAGTTCTGTACATGTTCCGACCATTCAGATGGGAATCATTGGATTTCGGAACAAGCTAA 3012 0.4329 MEARLGGEGYHFYGVGGSSELTSMGKRSREWNLNDWRWDGDLFLASRVNPVPAEDMRVGQQFFPLGSGISVAGGSSNTSSSCSEEGDLENHKRDKEGEKKRRVIVLEDDGLNEEAGALSLNLAGHASPVVEREIATWDGVNGKKGRVAGGTPNRAVCQVEDCGADLSRGKDYHRRHKVCEMHSKASRALVGNAMQRFCQQCSRFHILQEFDEGKRSCRRRLAGHNKRRRKTNTEAVPNGSPTNDDQTSSYLLISLLKILSNMHSDRSDQITDQDLLTHLLRSLASQNDEQGIRNLSNLLREQENLLREGGSSRKSEMVSALFSNGSQGSPTAVTQHQTVSMNRMQEEMMHPHDVRTADRQLISSVKPSISNSPPAYSEARDSSAQIKMNNFDLNDIYIDSDDGTDDLERLPVSTNLGTSSVDYPWAQQDSHQSSPPQTSGNSDSASAQSPSSSSGEAQSRTDRIVFKLFGKEPNEFPLVLKSQILDWLSHSPTDMESYIRPGCIVLTIYLRQAEAVWEDLCCDLTSSLNKLLDVSDDTFWRTGWVHIRVQHQMAFIFDGQVVIDTSLPFRSNNYSKIWTVSPIAVPASKRAQFSVKGVNLMRPATRLMCALEGKYLVCEDTHESTDDYSKELDELQCIRFSCSVPVTNGRGFIEIEDQGLSSSFFPFIVAEEDVCSEICVLEPLLELSETDPDIEGTGKIKDKSQAMDFIHEMGWLLHRSELKYRMVHMNSAVDLFPLERFTWLMEFSMDHDWCAVVKKLLNLLLHETVNKGDHPTLYQALSEMGLLHRAVRKNSKQLVELLLRYVPDKALVDGDNHSFLFKPDAVGPAGLTPLHIAAGKDGSEDVLEALTNDPCMVGIEAWKSARDSTGSTPEDYARLRGHYTYIHLVQKKINKRQGAPHVVVEIPSNPTESNTNPKQNESSTSFEIGKAEVRRGQGNCKLCNTKISCRTAVGRSTVYRPAMLSMVAIAAVCVCVALLFKSSPEVLYMFRPFRWESLDFGTS 1003
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre2g04186 1003 Gene3D - 148 218 IPR036893 GO:0003677|GO:0005634
Trre2g04186 1003 MobiDBLite consensus disorder prediction 85 101 - -
Trre2g04186 1003 MobiDBLite consensus disorder prediction 74 101 - -
Trre2g04186 1003 ProSiteProfiles Zinc finger SBP-type profile. 154 231 IPR004333 GO:0003677
Trre2g04186 1003 Pfam SBP domain 157 230 IPR004333 GO:0003677
Trre2g04186 1003 FunFam Squamosa promoter-binding-like protein 14 149 218 - -
Trre2g04186 1003 Gene3D - 756 903 IPR036770 -
Trre2g04186 1003 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 68 890 IPR044817 GO:0003677
Trre2g04186 1003 MobiDBLite consensus disorder prediction 906 926 - -
Trre2g04186 1003 SUPERFAMILY Ankyrin repeat 738 888 IPR036770 -
Trre2g04186 1003 SUPERFAMILY SBT domain 155 235 IPR036893 GO:0003677|GO:0005634
Trre2g04186 1003 MobiDBLite consensus disorder prediction 907 926 - -
Trre2g04186 1003 MobiDBLite consensus disorder prediction 221 246 - -
Trre2g04186 1003 MobiDBLite consensus disorder prediction 418 459 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre2g04186 Trre-Chr2 49274944 49281078 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre2g04186 1 1003 SBP-box Gene Family AT3G60030 56.121 0.0 983
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Trre2g04186 SBP 1.2e-28 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre2g04186 - - gmx:100809806 1652.11