Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre2g04185 ATGAGTTGTTTCAGCTGTTGCGAAGAGGACGAGTTCCACAAGACTGCTGAAAGTGGCGGACAGTATGTTGTAAAAAATCCAGCAGGAAATGATGGAAATTATCATGCCTCCGAGACTGCAAAACAGGGAGCTCAGACTGTTAAAGTGCAGCCCATTGAAGTTCCCGAGATACAGGCAGATGAACTGAAAGAAGTTACAGATAACTTTGGACAAGATTCTCTGATTGGAGAGGGATCCTATGGAAGAGTATATTATGGAGTTCTTAAAAGTGGGCAGGCGGCAGCAATCAAGAAGTTAGATGCCAGTAAACAGCCCGATGAGGAGTTCTTGGCTCAGGTTTCAATGGTATCAAGGCTGAAACACGATAATTTTGTCCAGTTGCTTGGATATTGCGTTGATGGAAATTCCCGTATTCTTGCCTATGAGTTTGCATCAAATGGGTCTCTTCATGACATTTTACATGGTAGAAAAGGGGTTAAAGGAGCACAGCCTGGTCCAGTTTTGACATGGGCACAGAGAGTAAAAATTGCTGTAGGGGCTGCAAGAGGGCTTGAATACTTGCATGAGAAGGCTGATCCCCATATTATTCACCGGGACATCAAGTCAAGCAATGTGCTAATCTTTGATGATGATGTTGCAAAAATTGCCGATTTTGATTTGTCAAATCAAGCTCCAGATATGGCTGCACGTCTTCATTCCACTCGTGTCCTTGGAACCTTTGGTTATCATGCACCCGAATATGCAATGACTGGACAATTAAATGCTAAGAGTGATGTATACAGTTTTGGTGTTGTGCTTCTGGAACTTCTGACCGGAAGGAAACCTGTTGATCATACTCTACCACGTGGACAGCAGAGTCTGGTTACTTGGGCCACACCAAAACTCAGTGAGGATAAAGTCAGACAGTGTGTTGATACAAGACTAGGAGGAGAATACCCACCAAAAGCTGTTGCTAAGATGGCTGCCGTTGCTGCACTGTGTGTGCAATATGAAGCTGATTTCAGACCTAACATGAGCATTGTAGTCAAAGCTCTTCAACCTTTGTTGACTGCCAGAGCTGGGCCTGCTGGTGAAACAGCAAACTAA 1086 0.442 MSCFSCCEEDEFHKTAESGGQYVVKNPAGNDGNYHASETAKQGAQTVKVQPIEVPEIQADELKEVTDNFGQDSLIGEGSYGRVYYGVLKSGQAAAIKKLDASKQPDEEFLAQVSMVSRLKHDNFVQLLGYCVDGNSRILAYEFASNGSLHDILHGRKGVKGAQPGPVLTWAQRVKIAVGAARGLEYLHEKADPHIIHRDIKSSNVLIFDDDVAKIADFDLSNQAPDMAARLHSTRVLGTFGYHAPEYAMTGQLNAKSDVYSFGVVLLELLTGRKPVDHTLPRGQQSLVTWATPKLSEDKVRQCVDTRLGGEYPPKAVAKMAAVAALCVQYEADFRPNMSIVVKALQPLLTARAGPAGETAN 361
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre2g04185 361 ProSitePatterns Serine/Threonine protein kinases active-site signature. 195 207 IPR008271 GO:0004672|GO:0006468
Trre2g04185 361 PIRSF ILK 9 353 - -
Trre2g04185 361 SMART serkin_6 69 349 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre2g04185 361 FunFam PTI1-like tyrosine-protein kinase 3 33 143 - -
Trre2g04185 361 ProSitePatterns Protein kinases ATP-binding region signature. 75 98 IPR017441 GO:0005524
Trre2g04185 361 SUPERFAMILY Protein kinase-like (PK-like) 48 345 IPR011009 -
Trre2g04185 361 CDD STKc_IRAK 75 348 - -
Trre2g04185 361 ProSiteProfiles Protein kinase domain profile. 69 349 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre2g04185 361 Gene3D Transferase(Phosphotransferase) domain 1 144 354 - -
Trre2g04185 361 FunFam pto-interacting protein 1 145 356 - -
Trre2g04185 361 Gene3D Phosphorylase Kinase; domain 1 30 143 - -
Trre2g04185 361 PANTHER PTO-INTERACTING PROTEIN 1-LIKE 4 352 - -
Trre2g04185 361 Pfam Protein tyrosine and serine/threonine kinase 73 345 IPR001245 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre2g04185 Trre-Chr2 49254518 49256966 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre2g04185 60 346 Receptor kinase-like Gene Family AT4G02010 51.546 1.12e-91 288
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIII Trre2g04185 PK_Tyr_Ser-Thr 1.4e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre2g04185 K13436 - gmx:100808383 675.241