Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Trre2g04185 | ATGAGTTGTTTCAGCTGTTGCGAAGAGGACGAGTTCCACAAGACTGCTGAAAGTGGCGGACAGTATGTTGTAAAAAATCCAGCAGGAAATGATGGAAATTATCATGCCTCCGAGACTGCAAAACAGGGAGCTCAGACTGTTAAAGTGCAGCCCATTGAAGTTCCCGAGATACAGGCAGATGAACTGAAAGAAGTTACAGATAACTTTGGACAAGATTCTCTGATTGGAGAGGGATCCTATGGAAGAGTATATTATGGAGTTCTTAAAAGTGGGCAGGCGGCAGCAATCAAGAAGTTAGATGCCAGTAAACAGCCCGATGAGGAGTTCTTGGCTCAGGTTTCAATGGTATCAAGGCTGAAACACGATAATTTTGTCCAGTTGCTTGGATATTGCGTTGATGGAAATTCCCGTATTCTTGCCTATGAGTTTGCATCAAATGGGTCTCTTCATGACATTTTACATGGTAGAAAAGGGGTTAAAGGAGCACAGCCTGGTCCAGTTTTGACATGGGCACAGAGAGTAAAAATTGCTGTAGGGGCTGCAAGAGGGCTTGAATACTTGCATGAGAAGGCTGATCCCCATATTATTCACCGGGACATCAAGTCAAGCAATGTGCTAATCTTTGATGATGATGTTGCAAAAATTGCCGATTTTGATTTGTCAAATCAAGCTCCAGATATGGCTGCACGTCTTCATTCCACTCGTGTCCTTGGAACCTTTGGTTATCATGCACCCGAATATGCAATGACTGGACAATTAAATGCTAAGAGTGATGTATACAGTTTTGGTGTTGTGCTTCTGGAACTTCTGACCGGAAGGAAACCTGTTGATCATACTCTACCACGTGGACAGCAGAGTCTGGTTACTTGGGCCACACCAAAACTCAGTGAGGATAAAGTCAGACAGTGTGTTGATACAAGACTAGGAGGAGAATACCCACCAAAAGCTGTTGCTAAGATGGCTGCCGTTGCTGCACTGTGTGTGCAATATGAAGCTGATTTCAGACCTAACATGAGCATTGTAGTCAAAGCTCTTCAACCTTTGTTGACTGCCAGAGCTGGGCCTGCTGGTGAAACAGCAAACTAA | 1086 | 0.442 | MSCFSCCEEDEFHKTAESGGQYVVKNPAGNDGNYHASETAKQGAQTVKVQPIEVPEIQADELKEVTDNFGQDSLIGEGSYGRVYYGVLKSGQAAAIKKLDASKQPDEEFLAQVSMVSRLKHDNFVQLLGYCVDGNSRILAYEFASNGSLHDILHGRKGVKGAQPGPVLTWAQRVKIAVGAARGLEYLHEKADPHIIHRDIKSSNVLIFDDDVAKIADFDLSNQAPDMAARLHSTRVLGTFGYHAPEYAMTGQLNAKSDVYSFGVVLLELLTGRKPVDHTLPRGQQSLVTWATPKLSEDKVRQCVDTRLGGEYPPKAVAKMAAVAALCVQYEADFRPNMSIVVKALQPLLTARAGPAGETAN | 361 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Trre2g04185 | 361 | ProSitePatterns | Serine/Threonine protein kinases active-site signature. | 195 | 207 | IPR008271 | GO:0004672|GO:0006468 | |
Trre2g04185 | 361 | PIRSF | ILK | 9 | 353 | - | - | |
Trre2g04185 | 361 | SMART | serkin_6 | 69 | 349 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Trre2g04185 | 361 | FunFam | PTI1-like tyrosine-protein kinase 3 | 33 | 143 | - | - | |
Trre2g04185 | 361 | ProSitePatterns | Protein kinases ATP-binding region signature. | 75 | 98 | IPR017441 | GO:0005524 | |
Trre2g04185 | 361 | SUPERFAMILY | Protein kinase-like (PK-like) | 48 | 345 | IPR011009 | - | |
Trre2g04185 | 361 | CDD | STKc_IRAK | 75 | 348 | - | - | |
Trre2g04185 | 361 | ProSiteProfiles | Protein kinase domain profile. | 69 | 349 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Trre2g04185 | 361 | Gene3D | Transferase(Phosphotransferase) domain 1 | 144 | 354 | - | - | |
Trre2g04185 | 361 | FunFam | pto-interacting protein 1 | 145 | 356 | - | - | |
Trre2g04185 | 361 | Gene3D | Phosphorylase Kinase; domain 1 | 30 | 143 | - | - | |
Trre2g04185 | 361 | PANTHER | PTO-INTERACTING PROTEIN 1-LIKE | 4 | 352 | - | - | |
Trre2g04185 | 361 | Pfam | Protein tyrosine and serine/threonine kinase | 73 | 345 | IPR001245 | GO:0004672|GO:0006468 |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Trre2g04185 | Trre-Chr2 | 49254518 | 49256966 | Dispersed/Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Trre2g04185 | 60 | 346 | Receptor kinase-like Gene Family | AT4G02010 | 51.546 | 1.12e-91 | 288 |
Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
---|---|---|---|---|---|---|---|
PK | RLK-Pelle_RLCK-VIII | Trre2g04185 | PK_Tyr_Ser-Thr | 1.4e-46 | CL0016 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Trre2g04185 | K13436 | - | gmx:100808383 | 675.241 |