Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre2g04184 ATGTATGGCGATGGTCCTACAAAGAGTATTATCACCGGTCACAAAAACTTCGTTGATGGCGTCAAAACAATGCAAACTGCCACTTTTGCAAATGTTGCACCCGGGTTCATTGCAAAGTCAATAGCATTCGAGAACACAGCTGGATGGGAGAAACATCAAGCAGTGGCATTTAGAAACCAAGGAGATATGTCAGCATTCTTCGACTGCGCCATGCACGGCTACCAAGACACATTATACGTTCAAGCCAATCGTCAATTCTACCGCAACTGTGAAATATTAGGTACCATAGACTTCATATTCGGCGCATCTCCAACCCTAATTCAAAACTCTCGAATCATCGTGCGTAAGCCAGGACCGAGTCAATTCAACACCGTAACCGCAGACGGCACAAAACAAAGAAACATGGCCACAGGAATTGTTCTCCAGAATTGCGAAATCACCGCAGAGAGGGAATTGTTCCCAGTTAAGGACCAATTCAAATCATATTTGGGTAGGCCATGGAAACAATATGCTAAGACAGTGGTTATGGAATCTAACATTGGCGACTTTCTTGCACCTGAAGGATGGACTCCATGGGATGGAAACATGTTTCTTGATACATTGTATTATGCCGAATTTGCTAATACTGGACCTGGTGCTAATCTTAATGGAAGAGTTAAGTGGAAAGGTTATCATCCAAACATTAATAAGAATGAAGCTGCTCAATTCACTGCAGCAGAATTCCTTAAAGCAGGACCTACTGGAAGAGCTGATGATTGGTTGAAGGCAACTGGTATTCCTTACACAGTTGGATTTGAAAAAGCTTGA 807 0.4275 MYGDGPTKSIITGHKNFVDGVKTMQTATFANVAPGFIAKSIAFENTAGWEKHQAVAFRNQGDMSAFFDCAMHGYQDTLYVQANRQFYRNCEILGTIDFIFGASPTLIQNSRIIVRKPGPSQFNTVTADGTKQRNMATGIVLQNCEITAERELFPVKDQFKSYLGRPWKQYAKTVVMESNIGDFLAPEGWTPWDGNMFLDTLYYAEFANTGPGANLNGRVKWKGYHPNINKNEAAQFTAAEFLKAGPTGRADDWLKATGIPYTVGFEKA 268
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre2g04184 268 Gene3D - 1 265 IPR012334 -
Trre2g04184 268 SUPERFAMILY Pectin lyase-like 1 263 IPR011050 -
Trre2g04184 268 FunFam Pectinesterase 4 1 265 - -
Trre2g04184 268 ProSitePatterns Pectinesterase signature 2. 92 101 IPR033131 -
Trre2g04184 268 PANTHER PECTINESTERASE 1 255 - -
Trre2g04184 268 Pfam Pectinesterase 1 243 IPR000070 GO:0030599|GO:0042545
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre2g04184 Trre-Chr2 49250492 49251400 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre2g04184 1 265 Carbohydrate Esterase AT4G33220 46.792 2.82e-88 266
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre2g04184 K01051 - gmx:100775246 481.1