Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre2g04182 ATGGAAAGTAAAGTACTTGTTTCAGCTGTTTCTCTTATTCTTGTAGTAGGTGTTGCCTTAGGTGTTGTTGCTCTTGTTCGAACGTCGAACCAACCCGGTGATAATGGTCCCGAATTGAATGCACATACTAAAGCTGTTCAAGCTGTGTGTCAAGGTAGTGATGATAAAAAATTTTGTGTTGATACTCTTAATCCTGTTAATACTTCAGACCCAAATGATTACATAAAAACCGTGGTTAAAACTTCTATGGAAGGTGTCATCAAAGCCTTCAACATGAGCGATAAGCTCGCAGTTGAAAATAACAAAGATAACTCGACTATTAAAATGGCGCTCGATGATTGTAAAGATTTGTTACAATCCGCGATTCAAGAATTACAAGCCTCGGAAGTTTTAATTCATGATAACAATACTCAGAACATTAATGAACGTACCGCGGAGCTTAAAAATTGGTTAGGTGCCGTTATTGCTTACCAACAATCGTGTCTTGACGGTTTTGATACCGACGGTGAAAAAAAGGTTCAGTCACAGTTGCAGACAGGTAGTTTGGATGATGTAGAAAAACTTACGGCCTTAGCACTTGATGTTGTGTCTGCGGTTTCGAAAGTACTTGCTGCATTTGACTTGGATTTGGATTTGAAAACTTCGTCTCGTAGGCTTTTTGAAGCCGGTCAAGAGGGCGAGGGTTATCCAGAATGGATGTCCGCTGCTGATCGTAAGCTAATGGCTGATATGAGTACGGGAATGGGCGCTCCTACGCCTAATGCGGTTGTTGCCAAAGATGGTAGTGGTCAATTTAAAACGGTACTAGATGCTATTAATTCTTATCCGAAAAAGCATGTAGGTAGATTTGTTATCTACGTGAAGGCCGGTGTCTATGACGAATATATTCAGGTTGACAAGAAAAAGAAAAACATTTTAATTTATGGCGATGGCCCTGCACAAACCATTATCACTGGTAGTAAAAATTTTGTAGATGGTTATAAGACTATGCGGTCGGCTACATTCTCTACCGTTGCGGAAGATTTCATTGCAAAGGCAATGACATTTGAGAACACAGCCGGAGCAAGCAAACATCAAGCAGTAGCACTTCGTGTGCAAGGCGACCGATCAGCTTTCTTCGACTGCGCCATACGAGGTTACCAAGACACATTATACGCACACGCACACCGACAATTCTACAAAAACTGCGAAATTTCAGGCACAGTTGATTTCATTTTCGGCTACGCATCAACAGTAATACAAAGTTCCAAAATAATAGTTCGAAAACCGGATGCAAATCAGCAAAACATAATTGTAGCAGATGGAACACAGCAAAAGAACATGCCAACAGGAGTAGTACTTCAGAATTGTGAGATCATGCCAGAAGCAGCATTACAAGCTGATAGATTAACAGTTAAATCATATTTAGCAAGACCATGGAAAGCATATTCAAGAGCAATATTCATGGAAAATACTATAGGTGATTTAATTCAACCAGATGGATATCTTCCATGGTCAGGGAATCAATTTCTTGATACATGTTTCTTTGCTGAGTATAATAATATTGGACCTGGTTCAGATATTAAAGCAAGAGTTAAATGGGGAAAAGGTGTTCTTACAAAAGCTGATGCAACAAGATATACTGCTGGTGAATGGATTCAAGGTGGCATGTGGTTGCCTGCTACTGGTATACCTTTTGAACTTGGATTCACTAAAGCTTGA 1701 0.3986 MESKVLVSAVSLILVVGVALGVVALVRTSNQPGDNGPELNAHTKAVQAVCQGSDDKKFCVDTLNPVNTSDPNDYIKTVVKTSMEGVIKAFNMSDKLAVENNKDNSTIKMALDDCKDLLQSAIQELQASEVLIHDNNTQNINERTAELKNWLGAVIAYQQSCLDGFDTDGEKKVQSQLQTGSLDDVEKLTALALDVVSAVSKVLAAFDLDLDLKTSSRRLFEAGQEGEGYPEWMSAADRKLMADMSTGMGAPTPNAVVAKDGSGQFKTVLDAINSYPKKHVGRFVIYVKAGVYDEYIQVDKKKKNILIYGDGPAQTIITGSKNFVDGYKTMRSATFSTVAEDFIAKAMTFENTAGASKHQAVALRVQGDRSAFFDCAIRGYQDTLYAHAHRQFYKNCEISGTVDFIFGYASTVIQSSKIIVRKPDANQQNIIVADGTQQKNMPTGVVLQNCEIMPEAALQADRLTVKSYLARPWKAYSRAIFMENTIGDLIQPDGYLPWSGNQFLDTCFFAEYNNIGPGSDIKARVKWGKGVLTKADATRYTAGEWIQGGMWLPATGIPFELGFTKA 566
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre2g04182 566 Pfam Plant invertase/pectin methylesterase inhibitor 45 194 IPR006501 GO:0004857
Trre2g04182 566 Gene3D - 249 563 IPR012334 -
Trre2g04182 566 CDD PMEI-like_3 48 201 - -
Trre2g04182 566 Gene3D Invertase/pectin methylesterase inhibitor family protein 41 200 IPR035513 -
Trre2g04182 566 Pfam Pectinesterase 254 548 IPR000070 GO:0030599|GO:0042545
Trre2g04182 566 ProSitePatterns Pectinesterase signature 2. 398 407 IPR033131 -
Trre2g04182 566 NCBIfam pectinesterase inhibitor domain 20 195 IPR006501 GO:0004857
Trre2g04182 566 SMART PMEI_2 41 195 IPR006501 GO:0004857
Trre2g04182 566 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 44 198 IPR035513 -
Trre2g04182 566 SUPERFAMILY Pectin lyase-like 250 561 IPR011050 -
Trre2g04182 566 FunFam Pectinesterase 249 563 - -
Trre2g04182 566 PANTHER PECTINESTERASE 18 553 - -
Trre2g04182 566 FunFam Pectinesterase 42 200 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre2g04182 Trre-Chr2 49211348 49213184 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre2g04182 4 563 Carbohydrate Esterase AT3G62170 39.160 1.50e-141 420
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre2g04182 K01051 - gmx:100820142 820.076