Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre2g04175 ATGTCAAGAGACTTTGATAACATAAAGGACATCAATGATGGGAAGGAAATCTGGAAACTTGCGGTTAGACTTGAAGATTTATGGAAAAGTGGTATTGGGAAAAATGAACACATGGAGTTTCTTATCCTTGACAAACAGGGAAACAACATTCAAGTGTTACTTCCAGCAGATCTTTGTCCTCTTTGGGGGCCAAAACTCCATGAAGGAAGTACTTATGTAATGAAAAATTTTAAGGTTCAGCCAAATGACTTTAGTGTTAAGTTTTGTGATCACTCCTTTAAGCTGGTCTTAGTTGGAGGTGAGGGTGGATCAGATGTCATACCAACTAAAATCCCAAATCTGCCAAACTACACTCTGAATTTCAAACCTTTTTCAGAAATCAAAAATGGCAATTACCGTTCTGATCTATTAGTTGATGTTATTGGTGCTGTGTTTGAGGTTGCTGCTGAAAAAAGAAACTTTAGCTCAAAGAAGTTTCCAACTACTGTTTCTTTAGCTGATTCAGAGATGAACATTGTCACACTTACACTCTGGGACAAATTCCAAGCTGAGTTTCTGGCTAAATATCATGAACTTGAAGATCATCAGCCTGTCATTGTCATCCTGAAACATGGTAAAATTAAGGAGCCACAAGGAGTCTATGATTTATCTATCCCAAATGCATGGAATGGAACAAAACTGATCATGGATCAAGAACTTCCAGAGGTCAAGGATTTCATAGAAAGATTACCAGATGACTTTGTTGCTCAAAGTCAGCTTGCATATACCAATGTTGAGACTAATGTCATAGTTCCACATAACTCTATGGGTTCACAATATTCAAATGGAAGTCGCTATTGCTTTAAAGCTCCTGCAACTCATATCTCGGATTTCTACTCACTACCTGATGAGGAAATTGTCACAATTGTTGCCACTACACACCATGTTTGTATTTCAAAGCATGGTTGGTATTACTTATCTTGTGTTGAATGCCCTAAAGCTTTGATTACTGATACTCCTCCTTACAAGTGCAAGATTGATGAGCATGTTACCCCTGAGCCTGTAATCATATACAGGCTTGAAGTTGAAGTACGTTATGAAGGTCATAAATCTAAGTTTCTTTTTTGGGACCGTGAATGTGCTGAACTTATTGGGAAAACTGCTGCTGAATTGAAATCTATAATGATTGAGGCTGGTGATTTTGATCCCCGTGAATACCCAAAAAAACTCGATGATATGATGGGGAAAGAATTAGCATTCAAAGTTAAGATCCAATCCAAAGCCAAAATGTCAAATGTCCTTACTTATAAGAGTGATCCAGAAATAATTGCTCATGTTAAAGACCTGCTTATAACAACTGAGAATTCCTCTCAACTTTCATTGCTCCCTACTCCACCTGATGCTGCAGGAACTAATTCATTTCCTATTTTCCCTATTCAAGATCTTTCTGTAACCCAAGATTCTGAAACTGATTCCATTAAAACCCAAACTCCATCAAAAAGGCCAGTAGGAGATGCTTGCAATGAAGAACCAGAATCAGCAAAAGGTTCTTCTACAAAAATTATGCTCAGGAGTGCTATCAAGAAGGAAAAAATTAATCACACTTAA 1587 0.3743 MSRDFDNIKDINDGKEIWKLAVRLEDLWKSGIGKNEHMEFLILDKQGNNIQVLLPADLCPLWGPKLHEGSTYVMKNFKVQPNDFSVKFCDHSFKLVLVGGEGGSDVIPTKIPNLPNYTLNFKPFSEIKNGNYRSDLLVDVIGAVFEVAAEKRNFSSKKFPTTVSLADSEMNIVTLTLWDKFQAEFLAKYHELEDHQPVIVILKHGKIKEPQGVYDLSIPNAWNGTKLIMDQELPEVKDFIERLPDDFVAQSQLAYTNVETNVIVPHNSMGSQYSNGSRYCFKAPATHISDFYSLPDEEIVTIVATTHHVCISKHGWYYLSCVECPKALITDTPPYKCKIDEHVTPEPVIIYRLEVEVRYEGHKSKFLFWDRECAELIGKTAAELKSIMIEAGDFDPREYPKKLDDMMGKELAFKVKIQSKAKMSNVLTYKSDPEIIAHVKDLLITTENSSQLSLLPTPPDAAGTNSFPIFPIQDLSVTQDSETDSIKTQTPSKRPVGDACNEEPESAKGSSTKIMLRSAIKKEKINHT 528
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre2g04175 528 SUPERFAMILY Nucleic acid-binding proteins 297 419 IPR012340 -
Trre2g04175 528 MobiDBLite consensus disorder prediction 478 528 - -
Trre2g04175 528 CDD RPA1_DBD_A_like 19 100 - -
Trre2g04175 528 Gene3D - 3 100 IPR012340 -
Trre2g04175 528 MobiDBLite consensus disorder prediction 478 495 - -
Trre2g04175 528 SUPERFAMILY Nucleic acid-binding proteins 119 247 IPR012340 -
Trre2g04175 528 Gene3D - 281 436 IPR012340 -
Trre2g04175 528 CDD RPA1_DBD_B_like 139 244 - -
Trre2g04175 528 SUPERFAMILY Nucleic acid-binding proteins 4 97 IPR012340 -
Trre2g04175 528 Gene3D - 113 248 IPR012340 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre2g04175 Trre-Chr2 49139099 49142293 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre2g04175 1 420 Core DNA Replication Machinery Family AT5G08020 21.896 9.53e-12 65.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre2g04175 - - tpra:123884216 314.694