Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre2g04167 ATGGGAAAAGGTTCTGCTTCTTCTTCCTCCTCTTCCAACGGTAGAAGAAGGAAACATAATTCATCCAATGTTTCATCATCTATAACACATCAAAATTCTGAAGAACATCTTTGTCCTGATCTTAACCTCGGATTAAGCATTTCCGCAACACATCAATATGTTCATTCTTCCAATTCAAGGGGACATTGGCAACCAATGCAACAACAAGCTTTTGAAGTGAATGATTGCAACGATTACAACAGTTTCTTTGTCAAAGTTTACATGGAAGGCATTCCAATTGGGAGAAAACTTAATTTATTAGCTCATGGTTGTTATGAAGAGCTAGTAAATACTCTTGAACAAATGTTTGATACTACCATTCTATGGGGGACTGAGATGGATGGAGTGCAATCAGAGAGATGTCATGTGTTAACTTATGAAGATGGAGAAGGAGATTTGATTATGGTTGGAGATGTCCCTTGGGAGATGTTCTTATCATCTGTGAAGAGGTTGAAGATCACAAGAGTCGACGCCTTCGGATTTTAA 525 0.381 MGKGSASSSSSSNGRRRKHNSSNVSSSITHQNSEEHLCPDLNLGLSISATHQYVHSSNSRGHWQPMQQQAFEVNDCNDYNSFFVKVYMEGIPIGRKLNLLAHGCYEELVNTLEQMFDTTILWGTEMDGVQSERCHVLTYEDGEGDLIMVGDVPWEMFLSSVKRLKITRVDAFGF 174
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre2g04167 174 ProSiteProfiles PB1 domain profile. 81 171 IPR000270 GO:0005515
Trre2g04167 174 Pfam AUX/IAA family 70 168 IPR033389 -
Trre2g04167 174 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 58 168 IPR003311 GO:0005634|GO:0006355
Trre2g04167 174 MobiDBLite consensus disorder prediction 1 33 - -
Trre2g04167 174 SUPERFAMILY CAD & PB1 domains 78 166 - -
Trre2g04167 174 Gene3D - 75 173 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre2g04167 Trre-Chr2 49101554 49102619 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre2g04167 65 166 B3 DNA Binding Superfamily AT1G59750 32.353 6.76e-13 63.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX or IAA Trre2g04167 AUX_IAA 6.7e-29 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre2g04167 K14484 - gmx:100781660 249.98