Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre2g04161 ATGGGATATTTGATTATTGCTGTTGCCATGGTGACTTTCACTATTATGATGTCAAAGATTTGGAAAATATGTGTAACTGTCTTTTGGAGGCCATATGCACTGACTAGGCATTTTAGAAAGCAAGGAGTCATGGGGCCAAGTTACTCACTTCTTTCTGGTTCTCTTCATGATATCAAAACAATGATGATTGATGCAAGGAAAAGTGTCATGGATAAACACTCACACGATATTACTCAAAGGGTTCTTCCTCACTATCAATTATGGTCCTCCTTATATGGGGAGAGATTTCTGTATTGGTACGGTATAGAAGCAATGATTGTGATCTCTGATGTAGAACTGGTGAAGGAGGTTTTAACAAATAAATATGGTTTCTATCCAAAACGTCAAGTAAGGCCTTCTACAGTAACAATGATAGGAGAAGGGTTAGCTCTTGTGGAGGGAGTGGAATGGGTTAAGCGCAGAAGGATATTTAATCCTGCTTTCTCCATGGATAAACTCAAGATTATGATAAGTAGAATGGCAGCATGTACTATTTCCATGGTAGATGAGTGGAAAAGAAAATCAATTGAAGCAAAGGATAAATCAAAGACAATAGAGATGAGTGAAGAATTTCAAGAGCTAACATCAAATATAATCGCTCACACTGCCTTTGGTACCAGTTTTGCTCATGGAAGAGATGCCTTTAAAGCACAAACAGAGCTTCAATTCCATTGTGCAGCTTCAAGTTCTGACGTTTTCATTCCTGGCACACAATACTTACCTACTAAGTCAAACTTAGAGATATGGAAGCTTGATAGGAAAATGAAGAAATCATTAAAATGCATTATTGAAAGTAGGTTGAATTCTCAATCAGATAATTGCTCTTATGGAGATGATTTACTAGGAGTGATGATGGATACAAAGAATGATGGTCCTAATAAGTTGAAGATGAATGAAATTATGGAAGAATGCAAAACCTTTTTCTTTGCTGGTCAAGAAACCACTTCAAACTGGCTTGTTTGGACTGTCTTTTTGTTGAGTTTGCATAAGGATTGGCAAGAGAAACTTAGACAAGAGATCTTGGAGATTTGTGGCATGGAAATTCCTGATGCAGATATGCTATCAAAGTTAAAAATGGTGAACATGGTGTTGCTGGAATCATTAAGGTTGTACTGTCCTGCAATAGAACTTGAAAGAATGGCTTCAAAAGACATGAAATTAGGAAATTTGATGATACCAAAAGGAACATGTCTCAAACTCCCAATTACAATGATTCACAGAAGTACAAAATATTGGGGTGAAGATGCAAATGAGTTCAATCCAATGAGATTCGTAAATGGTGTATCTAAGGCTGCAAATCACCCAAATGCTCTTCTTGCATTTTCTGTAGGTCCAAGAAATTGCATTGGTCAGAATTTTGCTATGTTGGAAGCTAAGACAGTGATGACCTTAATTCTTCAAAGGTTTTCTTGGTCTCTTTCCCCTGAGTATGAACATGCACCTGTTAACAACCTCACTTTGCAGCCACAACATGGTCTTCCCATCATTATAAAACCATTGCAATTCTAA 1548 0.3708 MGYLIIAVAMVTFTIMMSKIWKICVTVFWRPYALTRHFRKQGVMGPSYSLLSGSLHDIKTMMIDARKSVMDKHSHDITQRVLPHYQLWSSLYGERFLYWYGIEAMIVISDVELVKEVLTNKYGFYPKRQVRPSTVTMIGEGLALVEGVEWVKRRRIFNPAFSMDKLKIMISRMAACTISMVDEWKRKSIEAKDKSKTIEMSEEFQELTSNIIAHTAFGTSFAHGRDAFKAQTELQFHCAASSSDVFIPGTQYLPTKSNLEIWKLDRKMKKSLKCIIESRLNSQSDNCSYGDDLLGVMMDTKNDGPNKLKMNEIMEECKTFFFAGQETTSNWLVWTVFLLSLHKDWQEKLRQEILEICGMEIPDADMLSKLKMVNMVLLESLRLYCPAIELERMASKDMKLGNLMIPKGTCLKLPITMIHRSTKYWGEDANEFNPMRFVNGVSKAANHPNALLAFSVGPRNCIGQNFAMLEAKTVMTLILQRFSWSLSPEYEHAPVNNLTLQPQHGLPIIIKPLQF 515
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre2g04161 515 Gene3D Cytochrome P450 28 514 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Trre2g04161 515 Pfam Cytochrome P450 90 498 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Trre2g04161 515 PRINTS P450 superfamily signature 323 340 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Trre2g04161 515 PRINTS P450 superfamily signature 461 472 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Trre2g04161 515 PRINTS P450 superfamily signature 375 386 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Trre2g04161 515 PRINTS P450 superfamily signature 452 461 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Trre2g04161 515 FunFam Cytochrome P450 734A1 28 514 - -
Trre2g04161 515 PRINTS E-class P450 group I signature 207 225 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Trre2g04161 515 PRINTS E-class P450 group I signature 461 484 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Trre2g04161 515 PRINTS E-class P450 group I signature 89 108 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Trre2g04161 515 PRINTS E-class P450 group I signature 451 461 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Trre2g04161 515 PANTHER CYTOCHROME P450 FAMILY MEMBER 21 505 - -
Trre2g04161 515 SUPERFAMILY Cytochrome P450 77 512 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Trre2g04161 515 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 454 463 IPR017972 GO:0005506|GO:0016705
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre2g04161 Trre-Chr2 49023700 49026527 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre2g04161 21 514 Cytochrome P450 AT2G46960 54.092 0.0 566
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre2g04161 K20660 - aprc:113872106 788.104