Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre2g04154 ATGGGAAGACACTCATGCTGTTACAAGCAGAAGCTTAGGAAGGGACTATGGTCACCAGAGGAAGATGAAAAACTTCTAATGCATATAACAAAGTATGGACATGGATGTTGGAGCTCAGTACCTAAGCAAGCAGGTTTGCAAAGATGTGGTAAGAGTTGCAGACTTAGATGGATCAATTACTTAAGACCTGATTTAAAAAGAGGAACATTTTCACAAGATGAAGAAAATCTCATTGTTGAACTTCATGCAGTATTAGGCAATAGATGGTCTCAAATTGCGGCGCAGTTGCCGGGGAGGACGGACAATGAAATAAAGAATCTATGGAATTCTTGTTTGAAGAAAAAACTGAGACAAAAAGGTATAGATCCTGTAACTCATAAACCATTGTCTCATATTGAGAATAATGGAGAAGAAAATTCCAATGCAAAGAGTCAAGAAAAATCAGCAGAGTTATTATTATCATCCAATGAATTCAACCTTTTGAAATCAGAAAGTTCAAAATCAGATGCAGCTTCTAATTATGAGCAGAGAACATCACCATTAGAAATGGAAGGTTCTTGCAACAAAGATTTTTTCATTGACAGGTTCATTAGTACTACTACAAATTCTCAAGATTTGATGGGAAATTTTCCAATTCAGATGAGTTATTCAAACACTGAAAATCATTGTTTACCAAATGATTCAAACACTAGTAATCATAATCATAATCATAATCATAATTGGTTTAACCAAACTGGAAGAACATTTGATATGAATTCTGATGAATTTATGTTTCTTCCAAATTCTTTTTGCTGCAACAATTCACTTGATATTCCTTCTGACAATGTTTCTACTGAGATGAGAAGTAACATCAATTTGCACACCAATGATTTTTCTTCTTGGGGAGGAATAGGAATGATGGAAAATCATGCAGAAGAAGCTAATAAGTGGGAAAATAACAATAATAATAGTAATTATTTTCATAATCCAATATTAATGTTGGCTTCTGAATCATTATGCAATGAGATAAAGCCTTCAATGAATTTAGCAGCTGATAATACTTATGGAGCCATTTTGCCTAATGCAAAACAAGAACAAGAACAGTTACAAAGTAGTTCTAATATATTTTCTAAGGATATTCAGAAACTAAGAGAAGCTTTTGGAGATATGTAA 1152 0.3316 MGRHSCCYKQKLRKGLWSPEEDEKLLMHITKYGHGCWSSVPKQAGLQRCGKSCRLRWINYLRPDLKRGTFSQDEENLIVELHAVLGNRWSQIAAQLPGRTDNEIKNLWNSCLKKKLRQKGIDPVTHKPLSHIENNGEENSNAKSQEKSAELLLSSNEFNLLKSESSKSDAASNYEQRTSPLEMEGSCNKDFFIDRFISTTTNSQDLMGNFPIQMSYSNTENHCLPNDSNTSNHNHNHNHNWFNQTGRTFDMNSDEFMFLPNSFCCNNSLDIPSDNVSTEMRSNINLHTNDFSSWGGIGMMENHAEEANKWENNNNNSNYFHNPILMLASESLCNEIKPSMNLAADNTYGAILPNAKQEQEQLQSSSNIFSKDIQKLREAFGDM 383
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre2g04154 383 Gene3D - 14 66 - -
Trre2g04154 383 MobiDBLite consensus disorder prediction 134 148 - -
Trre2g04154 383 SMART sant 66 114 IPR001005 -
Trre2g04154 383 SMART sant 13 63 IPR001005 -
Trre2g04154 383 SUPERFAMILY Homeodomain-like 12 108 IPR009057 -
Trre2g04154 383 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Trre2g04154 383 FunFam MYB transcription factor 68 140 - -
Trre2g04154 383 MobiDBLite consensus disorder prediction 123 148 - -
Trre2g04154 383 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Trre2g04154 383 CDD SANT 17 61 IPR001005 -
Trre2g04154 383 Pfam Myb-like DNA-binding domain 67 111 IPR001005 -
Trre2g04154 383 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Trre2g04154 383 PANTHER MYB DOMAIN PROTEIN 55 1 341 - -
Trre2g04154 383 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Trre2g04154 383 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Trre2g04154 383 FunFam Myb transcription factor 11 67 - -
Trre2g04154 383 CDD SANT 69 109 IPR001005 -
Trre2g04154 383 Gene3D - 69 150 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre2g04154 Trre-Chr2 48957904 48959363 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre2g04154 1 153 MYB Transcription Factor Family AT4G01680 84.314 4.23e-92 275
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Trre2g04154 Myb_DNA-binding 5.6e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre2g04154 K09422 - gmx:100815881 447.588