Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre2g04148 ATGGCATCTTCCTTCTCAACACAGTTGGTTCAGAGTCAGAACATACTTCCTCGTTTTCATGCTGTACAGGGGAAGCCACATGTAGCGTGCAGCAGTGTCAAATCACAGCTTGGATGCAGTAAATTGTCATCAAGCCATCATTACGCAGCGAGGTTTTCTGTGTCACAACAATCTAAAGCGAAATCAATCACTTCTCGGAGAATAACATGTACTAGTAGTGCTGCAGAAAGTGTTGAAGAGCTACAAGCCAAAGTAACACACAAGGTTTTCTTTGATATAGAAATTGGGAAACAACCTGCTGGAAGAATTGTTATTGGCTTATTTGGAGATGTTGTTCCCAAAACAGTTGAAAATTTCCGAGCTTTGTCCACTGGAGAGAAAGGATATGGCTACAAAGGATCCTTCTTCCATCGTATAATCCCAAAATTCATGATTCAGGGAGGCGATTTCACTGAAGGAAATGGAACCGGTGGAGTCAGTATCTATGGTGGTAAATTTGAAGATGAGAGTTTTGACTTGAAGCATGTTGGTCCCGGAGTTTTGAGTATGGCGAATGCTGGTGCTAATTCCAATGGCAGTCAATTTTTTATTTGCACTGTACCGACTCCATGGTTAGACAATCGCCACGTTGTGTTTGGACATGTTCTTGAAGGACTGGATGTTGTAAAGAAGCTTGAATCACAGGAGGTAAGCAGCTACAACAATTATCCCGAGAAACCATGCAAAATCGCTGATTCTGGAGAACTGCCTATAGATGGTTGA 762 0.4213 MASSFSTQLVQSQNILPRFHAVQGKPHVACSSVKSQLGCSKLSSSHHYAARFSVSQQSKAKSITSRRITCTSSAAESVEELQAKVTHKVFFDIEIGKQPAGRIVIGLFGDVVPKTVENFRALSTGEKGYGYKGSFFHRIIPKFMIQGGDFTEGNGTGGVSIYGGKFEDESFDLKHVGPGVLSMANAGANSNGSQFFICTVPTPWLDNRHVVFGHVLEGLDVVKKLESQEVSSYNNYPEKPCKIADSGELPIDG 253
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre2g04148 253 Gene3D - 76 252 IPR029000 -
Trre2g04148 253 PANTHER PEPTIDYL-PROLYL CIS-TRANS ISOMERASE 88 249 - -
Trre2g04148 253 SUPERFAMILY Cyclophilin-like 81 249 IPR029000 -
Trre2g04148 253 ProSitePatterns Cyclophilin-type peptidyl-prolyl cis-trans isomerase signature. 131 148 IPR020892 GO:0003755|GO:0006457
Trre2g04148 253 CDD cyclophilin_ABH_like 87 247 - -
Trre2g04148 253 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 107 122 IPR002130 GO:0000413|GO:0003755
Trre2g04148 253 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 136 148 IPR002130 GO:0000413|GO:0003755
Trre2g04148 253 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 179 194 IPR002130 GO:0000413|GO:0003755
Trre2g04148 253 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 194 206 IPR002130 GO:0000413|GO:0003755
Trre2g04148 253 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 207 222 IPR002130 GO:0000413|GO:0003755
Trre2g04148 253 ProSiteProfiles Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain profile. 90 248 IPR002130 GO:0000413|GO:0003755
Trre2g04148 253 Pfam Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD 91 246 IPR002130 GO:0000413|GO:0003755
Trre2g04148 253 FunFam Peptidyl-prolyl cis-trans isomerase 75 253 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre2g04148 Trre-Chr2 48914419 48916738 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre2g04148 39 246 U-box Gene Family AT5G67530 35.268 1.19e-26 106
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre2g04148 K03768 - gmx:100526955 363.999