Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre2g04144 ATGGGTAACGGCAGTTCTCGTGTTGTTGGCTGTTTAGTGCCATTCAATGGCAAAAATGGTGTTGATTTGGAGTTTTTAGAGCCATTAGATGAAGGTTTAGGCCATTCTTTTTGTTATGTGAGACCGACTATGTTTGAATCTCCTGCTATTAGCCCGTCGAATTCTGAGAGGTTTACGGTTGATTCAAGTACTCTTGATTCTGAAACTTTGAGTGGTTCCTTTAGGCATGATAGCATGGAGCATTCTAATTCTTCTGGTTTGCATAAGCAGAGTAAGAATTTCCCTGAAACTACGTTCAAAACGATTTCGGGGGCTTCTGTTAGTGCTAATGTTTCCACAGCAAGGACTGGTGGTAACCAGAGTGCGTTGTTTGCTGGTGATTTCTTGGAACCTGCTGCATCGTTTGAGGGAACTGCTTCATTTGCTGCGATTCCTTTGCAGCCGGTTCCTCGTGGTTCTGGACCTTTAAACGGTTTTATGTCTGGACCTTTGGAGAGAGGTTTTGCCTCGGGTCCATTGGATAGAAGTGGTGGTTTCATGTCTGGGCCAATAGAGAAAGGAGTTATGTCAGGTCCTCTTGATGATACCGATAAATCCAACTTTTCAGCTCCGCTTGCACGTGGTCGCCGGAGACCACGTTTACAAAATCTCATGAGAAGTGTTAGTGGACCGATGAAGAACACTTTTTCTCGAACGTTCTCTAAGCATTCCATGGGTGGGAGTTGGATGCAGAGGTTGTTCATTCAACCGGTTACTCAATTGGCATGGCATTCCAAAGACGCAAAGTGTAGACCGGAAGTCTCTAGGAACTGTGGCATTGATGTTGGACCATATGAAACTGAGTATAAGCACACACATAATTTGCAGTGGGCTCAGGGAAAGGCTGGCGAGGATAGGGTTCATGTAGTGCTTTCTGAAGAACAAGGGTGGTTGTTTATTGGGATATATGATGGTTTTAGTGGGCCAGATGCACCTGATTTTTTGATGAGCCATCTTTATAGATTTCTAGACAAAGAATTGGAAGGTTTACTTTGGGATTATGAAGATAATCCTGTAGATCCACTTAAACCTGAAGTCCCTGAAACTGTAAAAGCCACCGCTGCTCCAGAATGCAGCGCGCAAGAAATGTCTGATACTTGTACTAATTCTAATCAAGAATGTTTTGAAGCTTCTTCTGGTCCTGAGTTAATCAAGGATCAATCATATAACAGTGAGATAGTTGAGATGAATGCTGAAGTTAATGTAAATGTTGAACACCGGTTATCTAATTGTGTATGTAACTCGTCAACTGTTTCCAATTCGGTTCAACATGGACAGTTGACCGGAAAAGGTAGAAAAAGTTTGAGGCTTTATGAGTTACTTCAGATGGAATCATGGGATGAACAAGGTTTTTTGTCAGACTCTACTCAATGTAAAGATTCTTCAGTTCCGAAGGAGTCGAAACTAGATGGGCATACAAGACCTTTGTCGTTTAGTTTAAGAGAAGATGGCTCTGGACATCAGGATGAAGTCCCGTCTACATCAGGTGAAAATGGAGGCGCTAGGTTTGATTCAACCAACCAGGAGCAGGAGGCTGTTTTTTCTGTTTCTGAATCAAGGCAGAATTCAAAGAAGTCGTTTATCAGTACAAAAATTAAAAAAATGTACAGGAAGCCAAAGTCCTTGTGTAAGAAACTCTTTCCTTGGAGTTATGATTGGCATAGGGAGGAAAGTAGTGTTGAGGAGAAAATAATAGAAGCATCAGGACCTATTAGAAAATGCAGGTCTGGAGTAGATCATAACGCAGTTTTAACAGCAATGGCTCGGGCTCTTGAAAGAACAGAAGAGGCATACATGGAAATGGCAGAGCATAATCTGGTAAAAAATCCAGAACAAGCTATTATGGGATCATGTGTTCTAGTGATGTTGATGAAGGATCAAGATGTTTATGTCATGAATCTGGGAGATAGTCGTGTGATTTTGGCTCAAGAAAGATCAAACGATCGTCATCCTAATTCAAGTTCTGTCAAGGATGACATGAGGCATAGAAATAGATCTAGAGAGTCATTAGTGCGCATGGAGCTCGATAGGATTTCAGAGGAGTCCCCAATTCACAACCATAATAATCATGTTATCAAGATGAACAAAAACCGCGAGATATCCTTTTGCAAATTAAAAATGAGGGCTCTGCAGCTTTCTACAGATCACAGCACCAGTATTGAAGAGGAAGTTTTCAGAATAAGAGCAGAACACCCCGATGATAGTCAAGCCATATTAAATGATCGAGTGAAAGGACATTTAAAAGTTACCAGAGCATTTGGTGCTGGGTTCTTGAAAAGGCCGTCTTTTAATGACGCTCTACTTGAGGTGTTTCAAATTAATTATGTCGGCTCTGCTCCCTACCTAAGTTGCACTCCTTCTGTACTTCACCACCGACTTTCCTCAAGTGATCGATTCTTGGTACTCTCCTCAGATGGGCTTTACCAGTATTTCAGCAATGAAGAGGTAGTTGCTCATGTCACATGGTTCATGGAAAATGTCCCAGAAGGTGATCCCGCACAGTACCTTATTGCAGAGCTTCTCTTCTGTGCTGCTAAAAAGAATGGAATGGATTTCCATGAATTGCTTGATATTCCTCATGGAGATCGACGGAAATATCATGATGATGTATATGTCATGGTTGTTTCTTTGGAGGGAAAGTTTTGGAGATCATCAAGTGATAAATCCTATTTTTTCCCTTCCTTTTAA 2727 0.4155 MGNGSSRVVGCLVPFNGKNGVDLEFLEPLDEGLGHSFCYVRPTMFESPAISPSNSERFTVDSSTLDSETLSGSFRHDSMEHSNSSGLHKQSKNFPETTFKTISGASVSANVSTARTGGNQSALFAGDFLEPAASFEGTASFAAIPLQPVPRGSGPLNGFMSGPLERGFASGPLDRSGGFMSGPIEKGVMSGPLDDTDKSNFSAPLARGRRRPRLQNLMRSVSGPMKNTFSRTFSKHSMGGSWMQRLFIQPVTQLAWHSKDAKCRPEVSRNCGIDVGPYETEYKHTHNLQWAQGKAGEDRVHVVLSEEQGWLFIGIYDGFSGPDAPDFLMSHLYRFLDKELEGLLWDYEDNPVDPLKPEVPETVKATAAPECSAQEMSDTCTNSNQECFEASSGPELIKDQSYNSEIVEMNAEVNVNVEHRLSNCVCNSSTVSNSVQHGQLTGKGRKSLRLYELLQMESWDEQGFLSDSTQCKDSSVPKESKLDGHTRPLSFSLREDGSGHQDEVPSTSGENGGARFDSTNQEQEAVFSVSESRQNSKKSFISTKIKKMYRKPKSLCKKLFPWSYDWHREESSVEEKIIEASGPIRKCRSGVDHNAVLTAMARALERTEEAYMEMAEHNLVKNPEQAIMGSCVLVMLMKDQDVYVMNLGDSRVILAQERSNDRHPNSSSVKDDMRHRNRSRESLVRMELDRISEESPIHNHNNHVIKMNKNREISFCKLKMRALQLSTDHSTSIEEEVFRIRAEHPDDSQAILNDRVKGHLKVTRAFGAGFLKRPSFNDALLEVFQINYVGSAPYLSCTPSVLHHRLSSSDRFLVLSSDGLYQYFSNEEVVAHVTWFMENVPEGDPAQYLIAELLFCAAKKNGMDFHELLDIPHGDRRKYHDDVYVMVVSLEGKFWRSSSDKSYFFPSF 908
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre2g04144 908 CDD PP2Cc 596 890 IPR001932 -
Trre2g04144 908 SMART PP2C_4 281 888 IPR001932 -
Trre2g04144 908 MobiDBLite consensus disorder prediction 465 531 - -
Trre2g04144 908 Gene3D - 508 901 IPR036457 -
Trre2g04144 908 FunFam Protein phosphatase 2C 32 257 424 - -
Trre2g04144 908 MobiDBLite consensus disorder prediction 656 678 - -
Trre2g04144 908 Pfam Protein phosphatase 2C 609 660 IPR001932 -
Trre2g04144 908 Pfam Protein phosphatase 2C 722 838 IPR001932 -
Trre2g04144 908 ProSiteProfiles PPM-type phosphatase domain profile. 281 890 IPR001932 -
Trre2g04144 908 PANTHER PROTEIN PHOSPHATASE 2C 285 888 IPR015655 GO:0004722|GO:0006470
Trre2g04144 908 MobiDBLite consensus disorder prediction 73 93 - -
Trre2g04144 908 MobiDBLite consensus disorder prediction 474 501 - -
Trre2g04144 908 Gene3D - 266 435 IPR036457 -
Trre2g04144 908 MobiDBLite consensus disorder prediction 502 531 - -
Trre2g04144 908 SUPERFAMILY PP2C-like 293 891 IPR036457 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre2g04144 Trre-Chr2 48876600 48881201 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre2g04144 1 898 PP2C-type Phosphatase Gene Family AT2G46920 62.183 0.0 1072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre2g04144 - - pcin:129315875 1384.01