Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre2g04126 ATGCTTAAATTGTTGCTTTTGTGGTTTAGGTGCTGTAGTGTTAAGGTTGGAGAAACCCTTAAGGTTGACCCAAATGAATTTGAGGCATGCATTCATCTTTCACAGGCTGCATTAGGTGAATCAAAGAAAGACAAAGGAAATGATTCTGTAGTTCTTTTTGTGAAAGTTGGTGAACAGAAGCTAGTTTTGGGAACCCTTATTAAGGACAAAATCCCTCAGATATCTCTTGAATTGGTTTTGGACAAGGAGTTTGAGCTTTCTCATAATTCCAAAACTGCTAGTGTCCATTTATGTGGATACAAAGCTCATTACCCTGGCGATGATGAATATCCTTGA 336 0.381 MLKLLLLWFRCCSVKVGETLKVDPNEFEACIHLSQAALGESKKDKGNDSVVLFVKVGEQKLVLGTLIKDKIPQISLELVLDKEFELSHNSKTASVHLCGYKAHYPGDDEYP 111
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre2g04126 111 Gene3D Nucleoplasmin core domain 6 105 - -
Trre2g04126 111 FunFam Histone deacetylase HDT1 7 106 - -
Trre2g04126 111 Pfam Nucleoplasmin-like domain 12 100 IPR041232 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre2g04126 Trre-Chr2 48751316 48751746 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre2g04126 9 101 C2H2 Transcription Factor Family AT3G44750 52.688 2.60e-20 80.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre2g04126 - - gmx:100795506 151.754