Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre2g04086 ATGGCACCCAAATCCAAAACCCGCGCCTCCTCCGAAGCTTCTGAATTCTTCAAACCTGGAACCTTGGTCGAAGTCAGCTCCGACGACGACGGATTCCGCGGTTCTTGGTTCACCGGCAAGATCCTCCGCCGCGTCTCCGCCGACAAATTCATGGTCGAGTATGACAACTTGATGGAAGACGAGAAAGGAAAAAAACCTTTGAAAGAAAGCCTCAAGCGTCAGCAGCTCCGACCAATTCTCCCGACGGAGACTAACCGTGAATTCAAATTCGGCGATGAAGTTGATGCGTATCACAATGACGGATGGTGGGAGGGTTACATTACCGAGGAATTGAAGGATGGAAGATTTGCTGTGTATTTCAGAGTCTCGAGGGAACAGATCGTGTTCACCAAGGAGGAAATCAGACTCCACCGTGAATGGATCGATGAAAAATGGGTTCCACCATTTCAACAACAGGAGGATAATGATAATGACAATGAAACTGGGAAAATGAAGCGTGTGAAGGCTGCTGAAACTGTGACTGTAGAGAAGGATGATTTTAAGTTTAAGGAAGGGGCATTGGTTGAGGTTTGTAGCGACGAAGATGGTTTCAAAGGGGCTTGGTTTTGTGCCACAATTGTTGAGTTAAAGGGTAGATCTAAGTTTGTTGTTGAGTACGATAGCCTGCTTGATGATGATTCAAAACTATTGAGAGAGGAGATTAGTCTCTTGCATATCAGGCCTCGTCCTCCAATAACTGCTGATGTTGCTGAGTTCAAATTTCTTGACGAAGTTGATGCCTTTTACAATGATGGTTGGTGGGTTGGTCTTGTTGCAAAAGTTCTTGGGGACTCCAAGTATATTGTTTATTTCAGGAACTCCAATGAAGAGCTGGAGTTTCAGCATTCTCAGTTGAGGCTACATCAGGATTGGATGGATGGCAAATGGGTCATGGCTTCTAAGGCATTGAAATATTGA 957 0.4525 MAPKSKTRASSEASEFFKPGTLVEVSSDDDGFRGSWFTGKILRRVSADKFMVEYDNLMEDEKGKKPLKESLKRQQLRPILPTETNREFKFGDEVDAYHNDGWWEGYITEELKDGRFAVYFRVSREQIVFTKEEIRLHREWIDEKWVPPFQQQEDNDNDNETGKMKRVKAAETVTVEKDDFKFKEGALVEVCSDEDGFKGAWFCATIVELKGRSKFVVEYDSLLDDDSKLLREEISLLHIRPRPPITADVAEFKFLDEVDAFYNDGWWVGLVAKVLGDSKYIVYFRNSNEELEFQHSQLRLHQDWMDGKWVMASKALKY 318
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre2g04086 318 Pfam Agenet domain 20 81 IPR008395 -
Trre2g04086 318 Pfam Agenet domain 185 244 IPR008395 -
Trre2g04086 318 CDD Tudor_Agenet_AtDUF_rpt1_3 182 244 - -
Trre2g04086 318 CDD Tudor_Agenet_AtDUF_rpt2_4 255 300 - -
Trre2g04086 318 PANTHER AGENET DOMAIN-CONTAINING PROTEIN-RELATED 177 314 - -
Trre2g04086 318 CDD Tudor_Agenet_AtDUF_rpt2_4 91 136 - -
Trre2g04086 318 Gene3D - 171 252 - -
Trre2g04086 318 CDD Tudor_Agenet_AtDUF_rpt1_3 17 81 - -
Trre2g04086 318 SMART agenet_At_2 250 306 IPR014002 -
Trre2g04086 318 SMART agenet_At_2 86 142 IPR014002 -
Trre2g04086 318 SMART agenet_At_2 15 84 IPR014002 -
Trre2g04086 318 SMART agenet_At_2 180 247 IPR014002 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre2g04086 Trre-Chr2 48359454 48363855 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre2g04086 192 304 PHD Transcription Factor Family AT5G58610 31.852 1.04e-08 54.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre2g04086 - - vum:124823040 418.313